Reference health
The best of both worlds: Combining lineage‐specific and universal bait sets in target‐enrichment hybridization reactions
23/23 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
4 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 23 checked references that resolve
resolves10.1111/j.1471-8286.2006.01549.x
Recovery of plant DNA using a reciprocating saw and silica‐based columns
resolves10.1093/sysbio/syab035
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
resolves10.1089/cmb.2012.0021
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
resolves10.1101/086298
Anchored Phylogenomics of Angiosperms I: Assessing the Robustness of Phylogenetic Estimates
resolves10.1093/bioinformatics/btp163
Biopython: freely available Python tools for computational molecular biology and bioinformatics
resolves10.3389/fpls.2018.01941
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
resolves10.3732/apps.1500039
A protocol for targeted enrichment of intron‐containing sequence markers for recent radiations: A phylogenomic example from <i>Heuchera</i> (Saxifragaceae)
resolves10.1093/gigascience/giz018
Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat
resolves10.1002/aps3.11337
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
resolves10.1093/sysbio/syy086
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
resolves10.1111/nph.16290
Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six subfamilies
resolves10.1093/bioinformatics/btp698
Fast and accurate long-read alignment with Burrows–Wheeler transform
resolves10.3732/apps.1300085
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae
resolves10.3732/ajb.1600227
Anchored phylogenomics improves the resolution of evolutionary relationships in the rapid radiation of <i>Protea</i> L.
resolves10.1111/nph.15732
Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity
resolves10.1002/aps3.11254
A customized nuclear target enrichment approach for developing a phylogenomic baseline for <i>Dioscorea</i> yams (Dioscoreaceae)
resolves10.1002/aps3.1036
Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics
resolves10.1016/j.ympev.2017.05.014
Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment
resolves10.3732/apps.1400042
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
The 4 references without a DOI — listed, not checked
no DOI — not checkedBaker W. A.Barker L.Botigué S.Dodsworth W.Eiserhardt E.Gaya J.Kim et al.2017.PAFTOL First Annual Report. Available from:https://www.kew.org/sites/default/files/2019‐07/PAFTOL%201st%20annual%20report.pdf[accessed 21 April 2021].
no DOI — not checkedOn the potential of Angiosperms353 for population genomics
no DOI — not checkedGNU Parallel: The command‐line power tool
no DOI — not checkedThiers B.2021. (continuously updated).Index Herbariorum. Websitehttp://sweetgum.nybg.org/science/ih/[accessed 21 May 2021].
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