Reference health

Gradient of microbial communities around seagrass roots was mediated by sediment grain size

71/71 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

4 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 71 checked references that resolve

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Seagrass rhizosphere microenvironment alters plant‐associated microbial community composition

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Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass

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Site-specific differences in microbial community structure and function within the rhizosphere and rhizoplane of wetland plants is plant species dependent

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Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm

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Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific

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Internal Winds in Water Lilies: An Adaptation for Life in Anaerobic Sediments

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Sediment Properties as Important Predictors of Carbon Storage in Zostera marina Meadows: A Comparison of Four European Areas

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Analysis of the Metabolic Utilization of Carbon Sources and Potential Functional Diversity of the Bacterial Community in Lab‐Scale Horizontal Subsurface‐Flow Constructed Wetlands

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Rhizosphere Effect on Nutrient Availability in Soil and Its Uptake by Plants: A Review

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UPARSE: highly accurate OTU sequences from microbial amplicon reads

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UCHIME improves sensitivity and speed of chimera detection

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Structure, variation, and assembly of the root-associated microbiomes of rice

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Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

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Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge

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TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA

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Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

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Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves

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Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

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Root Exudate — Biology

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Microbial interactions within the plant holobiont

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Cultivar-specific response of bacterial community to cadmium contamination in the rhizosphere of rice (Oryza sativa L.)

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Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies

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Biochar‐stimulated plant performance is strongly linked to microbial diversity and metabolic potential in the rhizosphere

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Grain size tunes microbial community assembly and nitrogen transformation activity under frequent hyporheic exchange: A column experiment

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Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA

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Effect of sediment grain size and bioturbation on decomposition of organic matter from aquaculture

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The Family Helicobacteraceae

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Linking microbial functional diversity of olive rhizosphere soil to management systems in commercial orchards in southern Spain

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Phenotype-Specific Bacterial Communities in the Cold-Water Coral Lophelia pertusa (Scleractinia) and Their Implications for the Coral's Nutrition, Health, and Distribution

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Identification of benzene-degrading Proteobacteria in a constructed wetland by employing in situ microcosms and RNA-stable isotope probing

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Niche and host-associated functional signatures of the root surface microbiome

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The Family Fusobacteriaceae

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Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates

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Effects of fish farming on the biological and geochemical properties of muddy and sandy sediments in the Mediterranean Sea

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Going back to the roots: the microbial ecology of the rhizosphere

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Unraveling the Composition of the Root-Associated Bacterial Microbiota of Phragmites australis and Typha latifolia

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

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Isolation and molecular characterization of genetically diverse antagonistic, diazotrophic red-pigmented vibrios from different mangrove rhizospheres

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Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon

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Can mud (silt and clay) concentration be used to predict soil organic carbon content within seagrass ecosystems?

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Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

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Use of Multiplex Terminal Restriction Fragment Length Polymorphism for Rapid and Simultaneous Analysis of Different Components of the Soil Microbial Community ▿

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Understanding Host-Microbiome Interactions - An Omics Approach

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Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments

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Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions

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Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

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The rhizospheric microbial community structure and diversity of deciduous and evergreen forests in Taihu Lake area, China

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The vertical distribution of prokaryotes in the surface sediment of Jiaolong cold seep at the northern South China Sea

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Diversity and assembly patterns of activated sludge microbial communities: A review

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Comparative Analysis of Bacterial Diversity and Community Structure in the Rhizosphere and Root Endosphere of Two Halophytes, Salicornia europaea and Glaux maritima, Collected from Two Brackish Lakes in Japan

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Soil microbial community structure in cucumber rhizosphere of different resistance cultivars to fusarium wilt

resolves10.1016/j.scitotenv.2020.137385

Variations of soil bacterial diversity and metabolic function with tidal flat elevation gradient in an artificial mangrove wetland

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Environment and geographic distance differ in relative importance for determining fungal community of rhizosphere and bulk soil

resolves10.3389/fmicb.2020.00161

Rhizosphere Microbial Community Structure Is Selected by Habitat but Not Plant Species in Two Tropical Seagrass Beds

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Variation of bacterial communities in water and sediments during the decomposition of Microcystis biomass

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Fate of 13C- and 15N-labelled rhizodeposition of Lolium perenne as function of the distance to the root surface

The 4 references without a DOI — listed, not checked

no DOI — not checkedSediment Microbiomes Associated with the Rhizosphere of Emergent Macrophytes in a Shallow, Subtropical Lake

no DOI — not checkedStudy on Ecology of Tropical Seagrass in China

no DOI — not checkedComparison of Soil Microbial Community Catabolic Diversity between Rhizosphere and Bulk Soil Induced by Tillage or Residue Retention

no DOI — not checkedZhang X.2021. “Bacterial Community in Seagrass Rhizosphere.” Data Set. Version 1. Science Data Bank.https://www.doi.org/10.11922/sciencedb.j00116.00003.

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