Reference health

Critical assessment of the automated AutoDock as a new docking tool for virtual screening

https://doi.org/10.1002/prot.21183
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35/35 checkable references clean · checked 2026-07-24

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

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The 35 checked references that resolve
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resolves10.1038/nature03197
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resolves10.1023/A:1011115820450
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resolves10.1002/prot.10465
Improved protein–ligand docking using GOLD
resolves10.1021/jm0306430
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resolves10.1023/A:1023866311551
Distilling the essential features of a protein surface for improving protein-ligand docking, scoring, and virtual screening
resolves10.1016/S1093-3263(02)00164-X
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
resolves10.1002/bip.10207
Gaussian docking functions
resolves10.1021/jm020406h
Surflex:  Fully Automatic Flexible Molecular Docking Using a Molecular Similarity-Based Search Engine
resolves10.1023/B:JCAM.0000017496.76572.6f
Comparative study of several algorithms for flexible ligand docking
resolves10.1002/prot.20149
Comparative evaluation of eight docking tools for docking and virtual screening accuracy
resolves10.1021/jm0302997
Evaluation of Docking Performance:  Comparative Data on Docking Algorithms
resolves10.1002/jcc.20141
Evaluation of library ranking efficacy in virtual screening
resolves10.1021/jm0003992
Detailed Analysis of Scoring Functions for Virtual Screening
resolves10.1002/prot.20088
A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance
resolves10.1021/jm050262h
Fast Structure-Based Virtual Ligand Screening Combining FRED, DOCK, and Surflex
resolves10.1021/jm990352k
Consensus Scoring:  A Method for Obtaining Improved Hit Rates from Docking Databases of Three-Dimensional Structures into Proteins
resolves10.1002/prot.340080302
Automated docking of substrates to proteins by simulated annealing
resolves10.1007/BF00124499
Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4
resolves10.1002/(SICI)1096-987X(19981115)19:14<1639::AID-JCC10>3.0.CO;2-B
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
resolves10.1038/nbt999
Ligand selectivity and competition between enzymes in silico
resolves10.1021/jm049504o
Virtual Screening of Human 5-Aminoimidazole-4-carboxamide Ribonucleotide Transformylase against the NCI Diversity Set by Use of AutoDock to Identify Novel Nonfolate Inhibitors
resolves10.1093/nar/28.1.235
The Protein Data Bank
resolves10.1038/nsb842
Structure-based design of a potent purine-based cyclin-dependent kinase inhibitor
resolves10.1021/bi002865v
Small Molecule Peptidomimetics Containing a Novel Phosphotyrosine Bioisostere Inhibit Protein Tyrosine Phosphatase 1B and Augment Insulin Action
resolves10.1016/j.str.2004.10.004
Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases
resolves10.1038/384644a0
Structural basis for selective inhibition of cyclooxygenase-2 by anti-inflammatory agents
resolves10.1016/S0169-409X(96)00423-1
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
resolves10.1016/0040-4020(80)80168-2
Iterative partial equalization of orbital electronegativity—a rapid access to atomic charges
resolves10.1093/protein/4.8.903
Electrostatic effects in proteins: comparison of dielectric and charge models
resolves10.1080/08927029308022161
An Effective Solvation Term Based on Atomic Occupancies for Use in Protein Simulations
resolves10.1007/BF00126743
The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure
resolves10.1016/0263-7855(93)87010-3
The molecular surface package
resolves10.1002/(SICI)1097-0134(19990101)34:1<4::AID-PROT2>3.0.CO;2-6
Ligand solvation in molecular docking
The 1 reference without a DOI — listed, not checked
no DOI — not checkedDrug‐receptor thermodynamics: introduction and applications
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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