Reference health
BUSCO: Assessing Genome Assembly and Annotation Completeness
23/23 checkable references clean · checked 2026-08-07
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 23 checked references that resolve
resolves10.1093/bioinformatics/btx153
GenomeScope: fast reference-free genome profiling from short reads
resolves10.1093/bioinformatics/btt310
Informed and automated <i>k</i>-mer size selection for genome assembly
resolves10.1093/bioinformatics/btv351
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
resolves10.1093/molbev/msx319
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
resolves10.1093/bioinformatics/btm071
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
resolves10.1093/gbe/evq083
Correlating Traits of Gene Retention, Sequence Divergence, Duplicability and Essentiality in Vertebrates, Arthropods, and Fungi
resolves10.1093/nar/gky1053
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
resolves10.1093/bioinformatics/btr010
A novel hybrid gene prediction method employing protein multiple sequence alignments
resolves10.1007/s13592-017-0542-2
RNA-Seq reveals that mitochondrial genes and long non-coding RNAs may play important roles in the bivoltine generations of the non-social Neotropical bee Tetrapedia diversipes
resolves10.1038/nrg2776
Alternative splicing and evolution: diversification, exon definition and function
resolves10.1002/bies.201600221
Nuclear codon reassignments in the genomics era and mechanisms behind their evolution
resolves10.1093/gbe/evx006
Genomic features of the damselfly
<i>Calopteryx splendens</i>
representing a sister clade to most insect orders
resolves10.1534/g3.117.300443
Improved Genome Assembly and Annotation for the Rock Pigeon (
<i>Columba livia</i>
)
resolves10.1128/genomeA.00281-18
Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata
resolves10.1186/s12864-017-4379-x
De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species
The 2 references without a DOI — listed, not checked
no DOI — not checkedCore Team R (2017) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
no DOI — not checkedBlanco E, Parra G, Guigó R (2007) Using geneid to identify genes. In: Baxevanis AD, Davison DB, Page RDM et al (eds) Current protocols in bioinformatics. John Wiley & Sons, Inc., Hoboken, NJ
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