Reference health
Ebb and flow of the chloroplast inverted repeat
1 of 52 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
10 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1128/MMBR.58.4.700-754.1994
The 51 checked references that resolve
resolves10.1007/BF00521274
Sequence analysis of the junction of the large single copy region and the large inverted repeat in the petunia chloroplast genome
resolves10.1007/BF00029143
Comparison of regions coding for tRNAHis genes of mitochondrial and chloroplast DNA in sunflower: a proposal concerning the classification of ?CP-like? tRNA genes
resolves10.1093/genetics/130.3.677
Biased gene conversion, copy number, and apparent mutation rate differences within chloroplast and bacterial genomes.
resolves10.1007/BF00324682
A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnI) and an ORF 2280 homologue
resolves10.1007/BF00020189
Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat
resolves10.1007/BF00398291
The location and possible evolutionary significance of small dispersed repeats in wheat ctDNA
resolves10.1007/BF00569336
In wheat ctDNA, segments of ribosomal protein genes are dispersed repeats, probably conserved by nonreciprocal recombination
resolves10.1073/pnas.89.17.8068
A homolog of Escherichia coli RecA protein in plastids of higher plants.
resolves10.1104/pp.102.1.155
Treatment of Pea (Pisum sativum L.) Protoplasts with DNA-Damaging Agents Induces a 39-Kilodalton Chloroplast Protein Immunologically Related to Escherichia coli RecA
resolves10.1128/MCB.15.6.3003
Inhibition of Chloroplast DNA Recombination and Repair by Dominant Negative Mutants of
<i>Escherichia coli</i>
RecA
resolves10.1093/genetics/10.3.278
INTERSPECIFIC HYBRIDIZATION IN NICOTIANA. II. A TETRAPLOID <i>GLUTINOSA-TABACUM</i> HYBRID, AN EXPERIMENTAL VERIFICATION OF WINGE'S HYPOTHESIS
resolves10.1007/978-1-4615-3276-7_2
Use of Chloroplast DNA Rearrangements in Reconstructing Plant Phylogeny
resolves10.1126/science.7542800
Whole-Genome Random Sequencing and Assembly of
<i>Haemophilus influenzae</i>
Rd
resolves10.1038/252226a0
Origin of Nicotiana tabacum L. detected by polypeptide composition of Fraction I protein
resolves10.1093/nar/22.9.1772
A powerful new technique to quickly prepare hundreds of plant extracts for PCR and RAPD analyses
resolves10.1093/nar/18.5.1297
Sequence of the<i>trn</i>H gene and the inverted repeat structure deletion site of the broad bean chloroplast genome
resolves10.1007/BF02464880
The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
resolves10.1046/j.1365-313X.1993.04061051.x
An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from <i>Arabidopsis thaliana</i><sup>†</sup>
resolves10.1007/BF00983544
Characterization and phylogenetic distribution of a chloroplast DNA rearrangement in theBerberidaceae
resolves10.1007/BF00315778
Identification and characterization of the Arabidopsis thaliana chloroplast DNA region containing the genes psbA, trnH and rps19′
resolves10.1007/BF00318388
The ndhH genes of gramminean plastomes are linked with the junctions between small single copy and inverted repeat regions
resolves10.1007/BF00336789
A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)
resolves10.1104/pp.106.4.1241
Genes Galore: A Summary of Methods for Accessing Results from Large-Scale Partial Sequencing of Anonymous Arabidopsis cDNA Clones
resolves10.1093/nar/18.4.1051
Nucleotide sequence of the mustard chioroplast genes<sup>trnH</sup>and rpsl9′
resolves10.1007/978-3-7091-9138-5_3
Comparison of Chloroplast and Mitochondrial Genome Evolution in Plants
resolves10.1073/pnas.84.3.769
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families
resolves10.1007/BF00355401
Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements
resolves10.1093/nar/21.7.1647
Two cDNAs from the plant<i>Arabidopsis thaliana</i>that partially restore recombination proficiency and DNA-damage resistance to<i>E.coli</i>mutants lacking recombination-intermediate-resolution activities
resolves10.1016/S0960-9822(95)00206-5
Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome
resolves10.1073/pnas.92.17.7759
Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines.
resolves10.1007/BF00293197
The chloroplast gene encoding ribosomal protein S4 in Chlamydomonas reinhardtii spans an inverted repeat — unique sequence junction and can be mutated to suppress a streptomycin dependence mutation in ribosomal protein S12
resolves10.1002/j.1460-2075.1986.tb04464.x
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
resolves10.1093/nar/11.20.7157
Nucleotide sequence of soybean chloroplast DNA regions which contain the<i>psb</i>A and<i>trn</i>H genes and cover the ends of the large single copy region and one end of the inverted repeats
resolves10.1093/nar/16.3.1199
The soybean chloroplast genome: complete sequence of the<i>rps</i>19 gene, including flanking parts containing exon 2 of<i>rpl</i>2 (upstream), but lacking<i>rpl</i>22 (downstream)
resolves10.1007/BF00280211
Differential expression of the partially duplicated chloroplast S10 ribosomal protein operon
resolves10.1007/BF00279998
Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16
resolves10.1073/pnas.91.21.9794
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
resolves10.1007/BF00365763
The site of deletion of the inverted repeat in pea chloroplast DNA contains duplicated gene fragments
resolves10.1073/pnas.84.24.9054
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.
resolves10.1016/0022-2836(92)90718-Y
Small single-copy region of plastid DNA in the non-photosynthetic angiosperm Epifagus virginiana contains only two genes
resolves10.1073/pnas.89.22.10648
Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant.
resolves10.1007/BF00326295
Repetitive sequence-mediated rearragements in Chlorella ellipsoidea chloroplast DNA: completion of nucleotide sequence of the large inverted repeat
resolves10.1146/annurev.pp.38.060187.002135
Evolution of Higher-Plant Chloroplast DNA-Encoded Genes: Implications for Structure-Function and Phylogenetic Studies
resolves10.1093/nar/12.16.6547
Junctions of the large single copy region and the inverted repeats in<i>Spinacia oleracea</i>and<i>Nicotiana debneyi</i>chloroplast DNA: sequence of the genes for tRNA<sup>His</sup>and the ribosomal proteins S19 and L2
The 10 references without a DOI — listed, not checked
no DOI — not checkedDelp G, Kössel H (1991) rRNAs and rRNA genes of plastids. In: Bogorad L, Vasil IK (eds) The molecular biology of plastids, Cell culture and somatic cell genetics of plants (vol 7A). Academic Press, San Diego, pp 139–167
no DOI — not checkedDoyle JJ, Doyle JL (1987) A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
no DOI — not checkedDunigan DD, Golemboski DB, Zaitlin M (1987) Plant resistance to viruses. Ciba Foundation Symposia 133:120–135. Wiley, Chicester
no DOI — not checkedGoodspeed TH (1954) The genus Nicotiana: origins, relationships and evolution of its species in the light of their distribution, morphology and cytogenetics. Chronica Botanica Company
no DOI — not checkedHolmes FO (1938) Inheritance of resistance to tobacco-mosaic virus in tobacco. Phytopathol 28:553–561
no DOI — not checkedHoot SB, Palmer JD (1984) Structural rearrangements, including parallel inversions, within the chloroplast genome ofAnemone and related genera. J Mol Evol 38:274–281
no DOI — not checkedOlmstead RG, Palmer JD (1991) Chloroplast DNA and systematics of the Solanaceae. In: Hawkes JG, Lester RN, Nee M, Estrada N (eds) Solanaceae III. Taxonomy, chemistry, evolution. Royal Botanic Gardens, Richmond, UK, pp 161–168
no DOI — not checkedPalmer JD (1991) Plastid chromosomes: structure and evolution. In: Bogorad L, Vasil IK (eds) The molecular biology of plastids. Cell culture and somatic cell genetics of plants (vol 7A). Academic Press, San Diego, pp 5–53
no DOI — not checkedPalmer JD, Boynton JE, Gillham NW, Harris EH (1985) Evolution and recombination of the large inverted repeat in Chlamydomonas chloroplast DNA. In: Steinback KE, Bonitz S, Arntzen CJ, Bogorad L (eds) Molecular biology of the photosynthetic apparatus. Cold Spring Harbor Laboratory Press, New York, pp 269–278
no DOI — not checkedWolfson R, Higgins KG, Sears BB (1991) Evidence for replication slippage in the evolution of Oenothera chloroplast DNA. Mol Biol Evol 8:709–720
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