Reference health
Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes
89/89 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
4 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 89 checked references that resolve
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Complete Nucleotide Sequence of the Sugarcane (Saccharum Officinarum) Chloroplast Genome: A Comparative Analysis of Four Monocot Chloroplast Genomes
resolves10.1186/1471-2229-6-21
The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
resolves10.1093/genetics/120.4.1095
RFLP Maps Based on a Common Set of Clones Reveal Modes of Chromosomal Evolution in Potato and Tomato.
resolves10.1007/BF00398291
The location and possible evolutionary significance of small dispersed repeats in wheat ctDNA
resolves10.1007/s002940050225
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
resolves10.1038/nbt0498-345
Containment of herbicide resistance through genetic engineering of the chloroplast genome
resolves10.1006/jmbi.2001.4921
Expression of the native cholera toxin B subunit gene and assembly as functional oligomers in transgenic tobacco chloroplasts11Edited by N.-H. Chua
resolves10.1016/S1360-1385(01)02193-8
Milestones in chloroplast genetic engineering: an environmentally friendly era in biotechnology
resolves10.1002/3527603638.ch8
Chloroplast Derived Antibodies, Biopharmaceuticals and Edible Vaccines
resolves10.1016/j.tibtech.2005.03.008
Breakthrough in chloroplast genetic engineering of agronomically important crops
resolves10.1104/pp.010233
Expression of an Antimicrobial Peptide via the Chloroplast Genome to Control Phytopathogenic Bacteria and Fungi
resolves10.1073/pnas.0400981101
Enhanced translation of a chloroplast-expressed
<i>Rbc</i>
S gene restores small subunit levels and photosynthesis in nuclear
<i>Rbc</i>
S antisense plants
resolves10.1006/geno.2002.7018
PipTools: A Computational Toolkit to Annotate and Analyze Pairwise Comparisons of Genomic Sequences
resolves10.1101/gr.8.3.175
Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment
resolves10.1046/j.1467-7652.2003.00008.x
A chloroplast transgenic approach to hyper‐express and purify Human Serum Albumin, a protein highly susceptible to proteolytic degradation
resolves10.1093/nar/gkh695
Rapid evolution of RNA editing sites in a small non-essential plastid gene
resolves10.1080/07352680590935387
Chloroplast Genetic Engineering: Recent Advances and Future Perspectives
resolves10.1007/s002990050008
Stable expression of a biodegradable protein-based polymer in tobacco chloroplasts
resolves10.1007/BF02464880
The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
resolves10.1007/s004380051106
RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity
resolves10.1007/BF00636479
The endpoints of an inversion in wheat chloroplast DNA are associated with short repeated sequences containing homology toatt-lambda
resolves10.1016/S0076-6879(05)95020-9
Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences
resolves10.1186/1471-2148-6-32
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
resolves10.1093/dnares/7.6.323
Complete Structure of the Chloroplast Genome of a Legume, Lotus japonicus
resolves10.2307/2666142
The Evolution of Non-Coding Chloroplast DNA and Its Application in Plant Systematics
resolves10.1093/dnares/11.4.247
Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
resolves10.1007/s00299-005-0097-y
Complete sequence and organization of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome
resolves10.1007/BF01731581
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
resolves10.2307/2419583
Chloroplast DNA Evidence on the Origin and Radiation of the Giant Lobelias in Eastern Africa
resolves10.1073/pnas.96.5.1840
Overexpression of the
<i>Bacillus thuringiensis</i>
(Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects
resolves10.1128/IAI.73.12.8266-8274.2005
Plant-Based Vaccine: Mice Immunized with Chloroplast-Derived Anthrax Protective Antigen Survive Anthrax Lethal Toxin Challenge
resolves10.1093/nar/gkg327
RNA editing in hornwort chloroplasts makes more than half the genes functional
resolves10.1104/pp.104.045187
Plastid-Expressed
<i>Betaine Aldehyde Dehydrogenase</i>
Gene in Carrot Cultured Cells, Roots, and Leaves Confers Enhanced Salt Tolerance
resolves10.1007/s11103-004-2907-y
Stable transformation of the cotton plastid genome and maternal inheritance of transgenes
resolves10.1093/nar/29.22.4633
REPuter: the manifold applications of repeat analysis on a genomic scale
resolves10.1023/A:1022100404542
Accumulation of trehalose within transgenic chloroplasts confers drought tolerance
resolves10.1186/1471-2164-7-61
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms
resolves10.1023/A:1022114427971
Chloroplast expression of His-tagged GUS-fusions: a general strategy to overproduce and purify foreign proteins using transplastomic plants as bioreactors
resolves10.1023/A:1022168321380
Overproduction of an alkali- and thermo-stable xylanase in tobacco chloroplasts and efficient recovery of the enzyme
resolves10.1007/s00299-003-0610-0
Polyester synthesis in transplastomic tobacco (Nicotiana tabacum L.): significant contents of polyhydroxybutyrate are associated with growth reduction
resolves10.1006/jmbi.1995.0460
Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing
resolves10.1016/j.gene.2004.06.008
The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice
resolves10.1093/oxfordjournals.molbev.a004033
Whole Chloroplast Genome Comparison of Rice, Maize, and Wheat: Implications for Chloroplast Gene Diversification and Phylogeny of Cereals
resolves10.1038/nbt0495-362
Amplification of a Chimeric Bacillus Gene in Chloroplasts Leads to an Extraordinary Level of an Insecticidal Protein in Tobacco
resolves10.1046/j.1467-7652.2004.00057.x
High‐yield expression of a viral peptide animal vaccine in transgenic tobacco chloroplasts
resolves10.1016/j.plantsci.2005.01.023
Generation of homoplasmic plastid transformants of a commercial cultivar of potato (Solanum tuberosum L.)
resolves10.1007/BF02823995
Chinese spring wheat (Triticum aestivum L.) chloroplast genome: Complete sequence and contig clones
resolves10.1073/pnas.84.3.769
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families
resolves10.1104/pp.105.063040
Characterization of Heterologous Multigene Operons in Transgenic Chloroplasts. Transcription, Processing, and Translation
resolves10.1038/nbt0901-870
Stable genetic transformation of tomato plastids and expression of a foreign protein in fruit
resolves10.1104/pp.104.057729
Engineering Cytoplasmic Male Sterility via the Chloroplast Genome by Expression of <i>β</i>-Ketothiolase
resolves10.1104/pp.103.020958
Phytoremediation of Organomercurial Compounds via Chloroplast Genetic Engineering
resolves10.1007/s11103-005-8882-0
Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes
resolves10.1023/A:1006478403810
The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization
resolves10.1093/oxfordjournals.molbev.a004222
The Plastid Chromosome of <i>Atropa belladonna</i> and its Comparison with that of <i>Nicotiana tabacum</i>: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation
resolves10.1093/nar/gkg579
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences
resolves10.1038/7952
Low probability of chloroplast movement from oilseed rape (Brassica napus) into wild Brassica rapa
resolves10.1093/oxfordjournals.molbev.a025645
Proliferation of direct repeats near the Oenothera chloroplast DNA origin of replication
resolves10.3732/ajb.92.1.142
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
resolves10.1002/j.1460-2075.1986.tb04464.x
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
resolves10.1046/j.1365-313X.1999.00508.x
Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker
resolves10.1002/j.1537-2197.1993.tb15238.x
CHLOROPLAST DNA EVIDENCE FOR THE INTERRELATIONSHIPS OF TOMATOES, POTATOES, AND PEPINOS (SOLANACEAE)
resolves10.1093/dnares/dsi006
Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae)
resolves10.1093/genetics/132.4.1141
High density molecular linkage maps of the tomato and potato genomes.
resolves10.2172/960402
A Comparison of the First Two Sequenced Chloroplast Genomes in Asteraceae: Lettuce and Sunflower
resolves10.1104/pp.104.050054
Metabolic Engineering of the Chloroplast Genome Using the <i>Echerichia coli ubi</i>C Gene Reveals That Chorismate Is a Readily Abundant Plant Precursor for p-Hydroxybenzoic Acid Biosynthesis
resolves10.1007/BF00339624
Deletions/insertions, short inverted repeats, sequences resembling att-lambda, and frame shift mutated open reading frames are involved in chloroplast DNA differences in the genus Oenothera subsection Munzia
resolves10.1073/pnas.91.21.9794
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
resolves10.1016/j.vaccine.2004.01.069
Expression of Bacillus anthracis protective antigen in transgenic chloroplasts of tobacco, a non-food/feed crop
resolves10.1016/j.gene.2004.06.018
High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris
The 4 references without a DOI — listed, not checked
no DOI — not checkedDeCosa B, Moar W, Lee S-B, Miller M, Daniell H (2001) Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals. Nat Biotechnol 9:71–74
no DOI — not checkedHupfer H, Swaitek M, Hornung S et al. (2000) Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome 1 of the five distinguishable Euoenthera plastomes. Mol Gen Genet 263:581–585
no DOI — not checkedMilligan BG, Hampton JN, Palmer JD (1989) Dispersed repeats and structural reorganization in subclover chloroplast DNA. Mol Biol Evol 6:355–368
no DOI — not checkedOlmstead RG, Sweere JA, Spangler RE, Bohs L, Palmer JD (1999) Phylogeny and provisional classification of the Solanaceae based on chloroplast DNA. In: Nee M, Symon DE, Jessup JP, Hawkes JG (eds) Solanaceae IV, advances in biology and utilization. Royal Botanic Gardens, Kew, pp 111–137
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work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
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