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Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome
60/60 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 60 checked references that resolve
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The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
resolves10.1007/s00294-004-0542-4
Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome
resolves10.1093/molbev/msl089
The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
resolves10.1007/s00299-006-0196-4
The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence
resolves10.1007/s002940050225
The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families
resolves10.1007/s00122-006-0254-x
Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes
resolves10.1073/pnas.89.16.7722
Chloroplast DNA inversions and the origin of the grass family (Poaceae).
resolves10.1186/1471-2148-9-130
Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes
resolves10.1111/j.1365-313X.2006.02953.x
The petunia restorer of fertility protein is part of a large mitochondrial complex that interacts with transcripts of the CMS‐associated locus
resolves10.1093/aob/mcm010
Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta)
resolves10.1093/nar/gkn081
The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera , subsection Oenothera : I. Sequence evaluation and plastome evolution †
resolves10.1186/1471-2164-8-228
Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts
resolves10.1007/s00239-008-9086-4
Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes
resolves10.1016/S0076-6879(05)95020-9
Methods for Obtaining and Analyzing Whole Chloroplast Genome Sequences
resolves10.1186/1471-2148-6-32
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
resolves10.1073/pnas.0709121104
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
resolves10.1007/s11816-009-0103-x
Development of a CMS-specific marker based on chloroplast-derived mitochondrial sequence in pepper
resolves10.1007/s00239-005-0254-5
Sequence of the Tomato Chloroplast DNA and Evolutionary Comparison of Solanaceous Plastid Genomes
resolves10.1093/dnares/7.6.323
Complete Structure of the Chloroplast Genome of a Legume, Lotus japonicus
resolves10.1111/j.1365-313X.2006.02673.x
Elimination of deleterious mutations in plastid genomes by gene conversion
resolves10.1093/dnares/11.4.247
Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
resolves10.1016/S1016-8478(23)13143-8
Widespread Occurrence of Small Inversions in the Chloroplast Genomes of Land Plants
resolves10.1007/s11103-006-9106-y
Isolation and characterization of the cytoplasmic male sterility-associated orf456 gene of chili pepper (Capsicum annuum L.)
resolves10.1186/1471-2229-8-101
Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome
resolves10.1111/j.1365-313X.2005.02533.x
The tobacco plastid <i>acc</i>D gene is essential and is required for leaf development
resolves10.1016/S1016-8478(23)13062-7
Characterization of the Plastid-encoded Carboxyltransferase Subunit (accD) Gene of Potato
resolves10.1007/s00239-009-9275-9
The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals
resolves10.1006/jmbi.1995.0460
Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing
resolves10.12702/1984-7033.v08n01a12
Phylogenetic relationships in Solanaceae and related species based on cpDNA sequence from plastid trnE-trnT region
resolves10.3732/ajb.90.1.93
Phylogenetic relationships among Poaceae and related families as inferred from morphology, inversions in the plastid genome, and sequence data from the mitochondrial and plastid genomes
resolves10.1073/pnas.0907801107
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
resolves10.1073/pnas.85.22.8573
Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species.
resolves10.1007/s00438-001-0606-9
Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA
resolves10.1016/0168-9525(90)90125-P
Contrasting modes and tempos of genome evolution in land plant organelles
resolves10.1073/pnas.84.3.769
Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families
resolves10.1007/s11103-005-8882-0
Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes
resolves10.1093/oxfordjournals.molbev.a004222
The Plastid Chromosome of <i>Atropa belladonna</i> and its Comparison with that of <i>Nicotiana tabacum</i>: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation
resolves10.1002/j.1460-2075.1986.tb04464.x
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
resolves10.1007/s00438-004-1075-8
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
resolves10.1007/BF00037152
Universal primers for amplification of three non-coding regions of chloroplast DNA
resolves10.1093/nar/gkl938
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
resolves10.1073/pnas.91.21.9794
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
resolves10.1534/genetics.108.087981
Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae
resolves10.1007/s00438-005-0092-6
The chloroplast genome of Nicotiana
sylvestris and Nicotiana
tomentosiformis: complete sequencing confirms that the Nicotiana
sylvestris progenitor is the maternal genome donor of Nicotiana
tabacum
The 3 references without a DOI — listed, not checked
no DOI — not checkedLevinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203–221
no DOI — not checkedMilligan BG, Hampton JN, Palmer JD (1989) Dispersed repeats and structural reorganization in subclover chloroplast DNA. Mol Biol Evol 6:355–368
no DOI — not checkedThompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. In: Current protocols in bioinformatics, chap 2, unit 2.3
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