Reference health
Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly
1 of 76 checkable references need attention · checked 2026-07-25
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
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References needing attention
does not resolve to a known work10.1128/AEM.66.11.5066-5072.2000.Updated
The 75 checked references that resolve
resolves10.1111/ppl.12971
Split‐root system optimization based on the survival, growth and development of the model Poaceae <i>Brachypodium distachyon</i>
resolves10.1007/s00425-019-03284-2
Do nitrogen- and sulphur-remobilization-related parameters measured at the onset of the reproductive stage provide early indicators to adjust N and S fertilization in oilseed rape (Brassica napus L.) grown under N- and/or S-limiting supplies?
resolves10.1111/j.1442-9993.2001.01070.pp.x
A new method for non‐parametric multivariate analysis of variance
resolves10.1007/978-3-642-13612-2_5
Plant Growth Promoting Rhizobacteria: Constraints in Bioformulation, Commercialization, and Future Strategies
resolves10.1007/s13213-012-0491-y
A standardized method for the sampling of rhizosphere and rhizoplan soil bacteria associated to a herbaceous root system
resolves10.1038/ismej.2013.104
Responses of soil bacterial and fungal communities to extreme desiccation and rewetting
resolves10.1111/j.2517-6161.1995.tb02031.x
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
resolves10.1094/MPMI.2000.13.11.1170
Simultaneous Imaging of <i>Pseudomonas fluorescens</i> WCS365 Populations Expressing Three Different Autofluorescent Proteins in the Rhizosphere: New Perspectives for Studying Microbial Communities
resolves10.1038/s41587-019-0209-9
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
resolves10.1111/nph.15551
Lipo‐chitooligosaccharides promote lateral root formation and modify auxin homeostasis in <i>Brachypodium distachyon</i>
resolves10.1038/nature11336
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
resolves10.1073/pnas.1000080107
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
resolves10.3389/fpls.2013.00298
Rhizosphere wettability decreases with root age: a problem or a strategy to increase water uptake of young roots?
resolves10.1094/MPMI.1997.10.1.79
Description of the Colonization of a Gnotobiotic Tomato Rhizosphere by <i>Pseudomonas fluorescens</i> Biocontrol Strain WCS365, Using Scanning Electron Microscopy
resolves10.1104/pp.15.00095
Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across <i>Brachypodium distachyon</i> Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments
resolves10.1111/1462-2920.14631
Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce
resolves10.1007/s10533-006-9065-z
Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition
resolves10.1038/s41598-019-40569-8
Developmental and physiological responses of Brachypodium distachyon to fluctuating nitrogen availability
resolves10.1007/s00374-020-01466-9
Application of beneficial microorganisms and their effects on soil, plants, and the environment: the scientific legacy of Professor Yoav Bashan
resolves10.1016/j.soilbio.2007.05.002
Comparison of factors limiting bacterial growth in different soils
resolves10.1111/j.1574-6941.2010.00860.x
Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?
resolves10.3389/fpls.2017.01513
A Low-Cost Imaging Method for the Temporal and Spatial Colorimetric Detection of Free Amines on Maize Root Surfaces
resolves10.1073/pnas.1717617115
Assembly and ecological function of the root microbiome across angiosperm plant species
resolves10.1016/j.femsec.2003.12.012
Colonization pattern of primary tomato roots by Pseudomonas fluorescens A6RI characterized by dilution plating, flow cytometry, fluorescence, confocal and scanning electron microscopy
resolves10.1111/j.1574-6941.2006.00093.x
Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community
resolves10.1007/s11104-007-9514-z
Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research
resolves10.1046/j.1469-8137.2000.00595.x
Sloughing of cap cells and carbon exudation from maize seedling roots in compacted sand
resolves10.1016/j.soilbio.2020.107754
A core microbiota of the plant-earthworm interaction conserved across soils
resolves10.1101/2021.05.07.441152
Changes in wheat rhizosphere microbiota in response to chemical inputs, plant genotype and phenotypic plasticity
resolves10.1007/s11104-016-2826-0
Bacterial populations in juvenile maize rhizospheres originate from both seed and soil
resolves10.1371/journal.pone.0164533
Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat
resolves10.1007/s11104-017-3542-0
In situ observation of localized, sub-mm scale changes of phosphorus biogeochemistry in the rhizosphere
resolves10.1016/j.soilbio.2015.01.025
Microbial hotspots and hot moments in soil: Concept & review
resolves10.1073/pnas.1202319109
Rapid responses of soil microorganisms improve plant fitness in novel environments
resolves10.2307/1941447
The Problem of Pattern and Scale in Ecology: The Robert H. MacArthur Award Lecture
resolves10.1128/AEM.71.12.8228-8235.2005
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
resolves10.1007/s00374-020-01452-1
Designing a multi-species inoculant of phosphate rock-solubilizing bacteria compatible with arbuscular mycorrhizae for plant growth promotion in low-P soil amended with PR
resolves10.14806/ej.17.1.200
Cutadapt removes adapter sequences from high-throughput sequencing reads
resolves10.1371/journal.pone.0061217
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
resolves10.1007/s11104-020-04479-3
Rhizosphere bacteria are more strongly related to plant root traits than fungi in temperate montane forests: insights from closed and open forest patches along an elevational gradient
resolves10.1038/ismej.2013.225
Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents
resolves10.1007/s10482-015-0530-3
Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility
resolves10.1128/AEM.66.10.4372-4377.2000
Bacterial Origin and Community Composition in the Barley Phytosphere as a Function of Habitat and Presowing Conditions
resolves10.1007/s00374-017-1255-4
Soil bacteria show different tolerance ranges to an unprecedented disturbance
resolves10.1111/j.1462-2920.2011.02551.x
Colonization of cucumber seeds by bacteria during germination
resolves10.1038/ismej.2014.196
Selection on soil microbiomes reveals reproducible impacts on plant function
resolves10.1111/gcb.13850
Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale
resolves10.1016/j.rhisph.2020.100249
Root microbiome changes with root branching order and root chemistry in peach rhizosphere soil
resolves10.1093/nar/gks1219
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
resolves10.1007/s11104-008-9568-6
The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
resolves10.3389/fevo.2019.00416
Effect of the Reproduction Method in an Artificial Selection Experiment at the Community Level
resolves10.1016/j.soilbio.2016.02.020
Rhizosphere shape of lentil and maize: Spatial distribution of enzyme activities
resolves10.1146/annurev-phyto-082712-102342
Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
resolves10.1093/nar/gkv007
limma powers differential expression analyses for RNA-sequencing and microarray studies
resolves10.1007/s00248-015-0672-x
Nicotiana Roots Recruit Rare Rhizosphere Taxa as Major Root-Inhabiting Microbes
resolves10.1016/j.rhisph.2018.02.003
Impact of root system architecture on rhizosphere and root microbiome
resolves10.1101/2020.11.19.390344
Asymmetric outcome of community coalescence of seed and soil microbiota during early seedling growth
resolves10.1007/BF00640630
Phosphatase activity in the rhizosphere and its relation to the depletion of soil organic phosphorus
resolves10.3389/fagro.2020.00008
Rhizosphere Spatiotemporal Organization–A Key to Rhizosphere Functions
resolves10.1128/AEM.64.12.5004-5007.1998
Ink and Vinegar, a Simple Staining Technique for Arbuscular-Mycorrhizal Fungi
resolves10.1071/FP09214
The shoot and root growth of Brachypodium and its potential as a model for wheat and other cereal crops
resolves10.1002/bit.20347
Group‐specific primer and probe sets to detect methanogenic communities using quantitative real‐time polymerase chain reaction
The 1 reference without a DOI — listed, not checked
no DOI — not checkedOksanen J, Kindt R, Legendre P, O’Hara B, Stevens MHH, Oksanen MJ, Suggests M (2007) The Vegan Package. Community Ecol Packag 10:719
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