Reference health
Mobile DNA distributions refine the phylogeny of “matsutake” mushrooms, Tricholoma sect. Caligata
48/48 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
14 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 48 checked references that resolve
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<i>Grasshopper,</i>a Long Terminal Repeat (LTR) Retroelement in the Phytopathogenic Fungus<i>Magnaporthe grisea</i>
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Identification of a prevalent Tricholoma matsutake ribotype in Japan by rDNA IGS1 spacer characterization
resolves10.1073/pnas.0909000107
Mobile elements reveal small population size in the ancient ancestors of
<i>Homo sapiens</i>
resolves10.1371/journal.pone.0040197
Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor
resolves10.1105/tpc.112.097261
Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements
resolves10.1007/s00572-002-0193-6
Development of microsatellite markers from an ectomycorrhizal fungus, Tricholoma matsutake, by an ISSR-suppression-PCR method
resolves10.1111/j.1469-8137.2006.01801.x
<i>Tricholoma matsutake</i> in a natural <i>Pinus densiflora</i> forest: correspondence between above‐ and below‐ground genets, association with multiple host trees and alteration of existing ectomycorrhizal communities
resolves10.1038/nature06556
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
resolves10.1038/nature08867
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
resolves10.1007/s00572-005-0369-y
Intra- and inter-specific variations in the copy number of two types of retrotransposons from the ectomycorrhizal basidiomycete Tricholoma matsutake
resolves10.1271/bbb.65.993
Expression of mar Y1, a gypsy-type LTR-retroelement from the Ectomycorrhizal Homobasidiomycete Tricholoma matsutake, in the Budding Yeast Saccharomyces cerevisiae
resolves10.1271/bbb.68.218
σ<sub><i>marY1</i></sub>, the LTR of the<i>gypsy</i>-Type Retroelement<i>marY1</i>from the Basidiomycete<i>Tricholoma matsutake</i>, Allows Multicopy DNA Integration in<i>Lentinula edodes</i>
resolves10.1128/AEM.66.8.3642-3645.2000
<i>marY1</i>
, a Member of the
<i>gypsy</i>
Group of Long Terminal Repeat Retroelements from the Ectomycorrhizal Basidiomycete
<i>Tricholoma matsutake</i>
resolves10.2307/3761530
Identification of Repetitive Sequences Containing Motifs of Retrotransposons in the Ectomycorrhizal Basidiomycete Tricholoma matsutake
resolves10.1271/bbb.65.2301
marY2N, a LINE-Like Non-Long Terminal Repeat (Non-LTR) Retroelement from the Ectomycorrhizal Homobasidiomycete Tricholoma matsutake
resolves10.1007/s00572-004-0319-0
Highly polymorphic DNA markers to specify strains of the ectomycorrhizal basidiomycete Tricholoma matsutake based on σmarY1, the long terminal repeat of gypsy-type retroelement marY1
resolves10.1128/AEM.02411-07
Traceability of Asian
<i>Matsutake</i>
, Specialty Mushrooms Produced by the Ectomycorrhizal Basidiomycete
<i>Tricholoma matsutake</i>
, on the Basis of Retroelement-Based DNA Markers
resolves10.1007/s00572-012-0466-7
Root endophyte interaction between ectomycorrhizal basidiomycete Tricholoma matsutake and arbuscular mycorrhizal tree Cedrela odorata, allowing in vitro synthesis of rhizospheric “shiro”
resolves10.1016/j.ympev.2006.08.005
Toothed whale monophyly reassessed by SINE insertion analysis: The absence of lineage sorting effects suggests a small population of a common ancestral species
resolves10.3852/12-068
Phylogenetic relationship and species delimitation of
<i>matsutake</i>
and allied species based on multilocus phylogeny and haplotype analyses
resolves10.1371/journal.pbio.1000602
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
resolves10.1126/science.1195330
Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison
resolves10.1038/41759
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
resolves10.1126/science.1194573
Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism
resolves10.1093/molbev/msm092
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
resolves10.1007/s00572-010-0304-8
Ectomycorrhization of Tricholoma matsutake and two major conifers in Finland—an assessment of in vitro mycorrhiza formation
resolves10.1007/BF00318394
Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola
resolves10.1099/mic.0.2006/005686-0
Single nucleotide polymorphisms in the ectomycorrhizal mushroom Tricholoma matsutake
resolves10.1007/s00572-005-0021-x
Ectomycorrhizal symbiosis in vitro between Tricholoma matsutake and Pinus densiflora seedlings that resembles naturally occurring ‘shiro’
resolves10.1007/s00572-009-0286-6
In vitro ectomycorrhizal specificity between the Asian red pine Pinus densiflora and Tricholoma matsutake and allied species from worldwide Pinaceae and Fagaceae forests
The 14 references without a DOI — listed, not checked
no DOI — not checkedAmaranthus MP, Pilz D, Moore A, Abbott R, Luoma D (2000) American matsutake (Tricholoma magnivelare) across spatial and temporal scales. USDA Forest Service Gen. Tech. Rep. PSW-GTR-178:99–108
no DOI — not checkedBon M (1991) Flore mycologique d'Europe. 2. Les tricholomes et ressemblants. Tricholomataceae (Fayod) Heim (1ère partie). Doc Mycol, Mémoire hors série no 2. Edité par l'association d'écologie et mycologie, Lille
no DOI — not checkedBushman F (2002) Lateral DNA transfer: mechanisms and consequences. Cold Spring Harbor, New York
no DOI — not checkedDeininger PL (1989) SINEs: short interspersed repeated DNA elements in higher eucaryotes. In: Berg DE, Howe MM (eds) Mobile DNA. ASM, Washington DC, pp 619–636
no DOI — not checkedHibbett DS, Thorn RG (2001) Basidiomycota: homobasidiomycetes. In: McLaughlin DJ, Laughlin EG, Lemke PA (eds) The mycota: a comprehensive treatise on fungi as experimental systems for basic and applied research. Springer, Berlin, pp 121–168
no DOI — not checkedIntini M, Dogan HH, Riva A (2003) Tricholoma anatolicum spec. nov.: a new member of the matsutake group. Micol Veg Medit 18:135–142
no DOI — not checkedNeda H (2012) Collection of Tricholoma caligatum (European Matsutake) in Italia. Newsl Mycol Soc Jpn 2012–3:2–4 (in Japanese)
no DOI — not checkedOtani Y (1976) Tricholoma bakamatsutake Hongo collected in New Guinea. Trans Mycol Soc Jpn 17:363–365
no DOI — not checkedSambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor
no DOI — not checkedSmith SE, Read DJ (2009) Mycorrhizal symbiosis, 3rd edn. Acadmic, London
no DOI — not checkedViviani D (1834) I funghi d'Italia e principalmente le loro specie mangerecce, velenose, o sospette discritte ed illustrate con tavole disegnate, Tipografia e Litografia Ponthenier, Genova pp 1–64
no DOI — not checkedWalz M (2004) Electrophoretic karyotyping. In: Esser K, Kück U (eds) The Mycota II, a comprehensive treatise on fungi as experimental systems for basic and applied research: genetics and biotechnology, 2nd edn. Springer, Berlin, pp 53–70
no DOI — not checkedWan J, Koike A, Yamanaka K, Sotome K, Morinaga T, Tanaka C, Terashima Y, Aimi T (2012) Genetic diversity of Tricholoma matsutake and close allies associated with broad-leaved trees in Asia. Mushroom Sci Biotechnol 19:167–174
no DOI — not checkedYamanaka K, Aimi T, Wan J, Cao H, Chen M (2011) Species of host trees associated with Tricholoma matsutake and allies in Asia. Mushroom Sci Biotechnol 19:79–87
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