Reference health
Genome of the candidate phylum Aminicenantes bacterium from a deep subsurface thermal aquifer revealed its fermentative saccharolytic lifestyle
39/39 checkable references clean · checked 2026-07-23
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 39 checked references that resolve
resolves10.1038/nbt.2579
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
resolves10.1038/ncomms13219
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
resolves10.1038/nbt.3893
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
resolves10.1038/srep08365
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
resolves10.1371/journal.pone.0092139
Global Patterns of Abundance, Diversity and Community Structure of the Aminicenantes (Candidate Phylum OP8)
resolves10.1111/1462-2920.12093
<i>
<scp>V</scp>
ibrio parahaemolyticus
</i>
type
<scp>IV</scp>
pili mediate interactions with diatom‐derived chitin and point to an unexplored mechanism of environmental persistence
resolves10.1038/ismej.2015.153
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
resolves10.1093/sysbio/syq010
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
resolves10.1038/ismej.2017.39
Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments
resolves10.1128/JB.180.2.366-376.1998
Novel Division Level Bacterial Diversity in a Yellowstone Hot Spring
resolves10.1128/AEM.01412-07
Conservation of the Chitin Utilization Pathway in the
<i>Vibrionaceae</i>
resolves10.3390/md9040645
Carbohydrase Systems of Saccharophagus degradans Degrading Marine Complex Polysaccharides
resolves10.1093/femsec/fiy152
A metagenomic window into the 2-km-deep terrestrial subsurface aquifer revealed multiple pathways of organic matter decomposition
resolves10.1038/ismej.2015.150
A metagenomic window into carbon metabolism at 3 km depth in Precambrian continental crust
resolves10.1016/j.tim.2007.10.010
Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development
resolves10.1128/AEM.00718-09
Metabolic Versatility and Indigenous Origin of the Archaeon
<i>Thermococcus sibiricus</i>
, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis
resolves10.14806/ej.17.1.200
Cutadapt removes adapter sequences from high-throughput sequencing reads
resolves10.1186/1471-2105-14-60
Genome sequence-based species delimitation with confidence intervals and improved distance functions
resolves10.1038/ismej.2015.97
Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics
resolves10.1101/gr.186072.114
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
resolves10.1038/nbt.4229
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
resolves10.1111/1462-2920.13362
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO
<sub>2</sub>
concentrations
resolves10.1093/nar/gks1219
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
resolves10.1038/nature12352
Insights into the phylogeny and coding potential of microbial dark matter
resolves10.3389/fmicb.2016.00731
Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well
resolves10.7287/peerj.preprints.1900v1
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
resolves10.1128/AEM.01541-09
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
resolves10.1016/S0141-0229(98)00171-9
Microbial β-N-acetylhexosaminidases and their biotechnological applications
resolves10.1101/gr.183012.114
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
resolves10.1111/1462-2920.12284
Genome analysis of
<i>
<scp>C</scp>
hitinivibrio alkaliphilus
</i>
gen. nov., sp. nov., a novel extremely haloalkaliphilic anaerobic chitinolytic bacterium from the candidate phylum
<scp>T</scp>
ermite
<scp>G</scp>
roup 3
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
The 1 reference without a DOI — listed, not checked
no DOI — not checkedBanks D, Frank Y, Kadnikov V, Karnachuk O, Watts M, Boyce A, Frengstad B (2014) Hydrochemical data report from sampling of two deep abandoned hydrocarbon exploration wells: Byelii Yar and Parabel’, Tomsk oblast’, western Siberia, Russian Federation. NGU Report, 2014.034. Geological Survey of Norway, Trondheim
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