Reference health
Introduction to Big Mechanisms in Systems Biology
22/22 checkable references clean · checked 2026-08-09
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 22 checked references that resolve
resolves10.1186/s12918-016-0256-5
Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data
resolves10.1186/1752-0509-4-20
Integrated cellular network of transcription regulations and protein-protein interactions
resolves10.1093/bioinformatics/bth178
Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle
resolves10.1186/1471-2105-7-421
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
resolves10.1186/1471-2105-8-188
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
resolves10.1093/bioinformatics/btl380
Identification of transcription factor cooperativity via stochastic system model
resolves10.1186/1471-2105-6-258
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
resolves10.1186/1471-2105-12-335
Constructing gene regulatory networks for long term photosynthetic light acclimation in Arabidopsis thaliana
resolves10.1186/1755-8794-1-46
A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining
resolves10.1159/000347104
Identification of Infection- and Defense-Related Genes via a Dynamic Host-Pathogen Interaction Network Using a Candida Albicans-Zebrafish Infection Model
resolves10.1155/2015/792843
Dynamic Network-Based Relevance Score Reveals Essential Proteins and Functional Modules in Directed Differentiation
resolves10.1371/journal.pone.0097902
On the Crucial Cerebellar Wound Healing-Related Pathways and Their Cross-Talks after Traumatic Brain Injury in Danio rerio
resolves10.1186/1752-0509-2-56
Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
resolves10.1177/117693510600200008
Construction and Clarification of Dynamic Gene Regulatory Network of Cancer Cell Cycle via Microarray Data
resolves10.1186/1755-8794-4-2
A network-based biomarker approach for molecular investigation and diagnosis of lung cancer
resolves10.4137/EBO.S26195
Using Nonlinear Stochastic Evolutionary Game Strategy to Model an Evolutionary Biological Network of Organ Carcinogenesis under a Natural Selection Scheme
resolves10.1109/TCBB.2013.23
On the Increase in Network Robustness and Decrease in Network Response Ability during the Aging Process: A Systems Biology Approach via Microarray Data
resolves10.18632/oncotarget.7388
Investigating the specific core genetic-and-epigenetic networks of cellular mechanisms involved in human aging in peripheral blood mononuclear cells
resolves10.1186/1755-8794-8-S4-S4
Multiple target drug cocktail design for attacking the core network markers of four cancers using ligand-based and structure-based virtual screening methods
The 7 references without a DOI — listed, not checked
no DOI — not checkedA data science Big Mechanism for DARPA, <http://semanticommunity.info/>.
no DOI — not checked10.1016/B978-0-12-809479-2.00001-9_bib3
no DOI — not checked10.1016/B978-0-12-809479-2.00001-9_bib4
no DOI — not checked10.1016/B978-0-12-809479-2.00001-9_bib5
no DOI — not checkedNonlinear dynamic trans/cis regulatory circuit for gene transcription via microarray data
no DOI — not checkedIdentifying functional mechanisms of gene and protein regulatory networks in response to a broader range of environmental stresses
no DOI — not checkedReconstructing a network of stress-response regulators via dynamic system modeling of gene regulation
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carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
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