At the dated check, the references listed below either did not resolve in
Crossref or DataCite, or carried a retraction notice. Each one is shown with the
registry record that put it there.
The 175 checked references that resolve
resolves10.1038/35048692Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
resolves10.1016/j.cell.2005.02.007Plant Nuclear RNA Polymerase IV Mediates siRNA and DNA Methylation-Dependent Heterochromatin Formation
resolves10.1126/science.1059495Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution
resolves10.1126/science.1069594Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution
resolves10.1126/science.1069595Structural Basis of Transcription Initiation: An RNA Polymerase Holoenzyme-DNA Complex
resolves10.1038/nature05932Structural basis for transcription elongation by bacterial RNA polymerase
resolves10.1038/nature752Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution
resolves10.1016/j.molcel.2011.11.024A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays between Kinase, Phosphatase, and Isomerase Enzymes along Genes
resolves10.1038/nsmb.1913Gene-specific RNA polymerase II phosphorylation and the CTD code
resolves10.1016/j.cell.2006.11.023Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
resolves10.1073/pnas.1011274108Templated nucleoside triphosphate binding to a noncatalytic site on RNA polymerase regulates transcription
resolves10.1074/jbc.C400316200Discrimination against Deoxyribonucleotide Substrates by Bacterial RNA Polymerase
resolves10.1093/nar/gks383Active site opening and closure control translocation of multisubunit RNA polymerase
resolves10.1021/ja302077dDissecting Chemical Interactions Governing RNA Polymerase II Transcriptional Fidelity
resolves10.1016/j.molcel.2008.04.023The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin
resolves10.1371/journal.pgen.1002627Dissection of Pol II Trigger Loop Function and Pol II Activity–Dependent Control of Start Site Selection In Vivo
resolves10.1016/j.molcel.2008.04.017Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation
resolves10.1016/j.molcel.2007.06.008A Central Role of the RNA Polymerase Trigger Loop in Active-Site Rearrangement during Transcriptional Pausing
resolves10.1038/nsmb.1732Role of the RNA polymerase trigger loop in catalysis and pausing
resolves10.1186/jbiol98Bridge helix and trigger loop perturbations generate superactive RNA polymerases
resolves10.1073/pnas.1009898107RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription
resolves10.1016/j.bbagrm.2010.05.002Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase
resolves10.1021/ja210656kDynamics of Pyrophosphate Ion Release and Its Coupled Trigger Loop Motion from Closed to Open State in RNA Polymerase II
resolves10.1093/nar/gkq1359Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
resolves10.1093/nar/gkr1273Transcription initiation factor DksA has diverse effects on RNA chain elongation
resolves10.1038/nature09785Structural basis of RNA polymerase II backtracking, arrest and reactivation
resolves10.1126/science.1168729Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution
resolves10.1016/j.molcel.2009.06.002Structural Basis of Transcription: Mismatch-Specific Fidelity Mechanisms and Paused RNA Polymerase II with Frayed RNA
resolves10.1126/science.8235608Multiple RNA Polymerase Conformations and GreA: Control of the Fidelity of Transcription
resolves10.1073/pnas.1200939109Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II
resolves10.1101/gad.6.7.1342The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII.
resolves10.1074/jbc.M109.006908Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II
resolves10.1016/j.molcel.2012.02.006Mechanism of Translesion Transcription by RNA Polymerase II and Its Role in Cellular Resistance to DNA Damage
resolves10.1186/2046-1682-5-11Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase
resolves10.1111/j.1365-2443.2009.01372.xNovel RNA polymerase II mutation suppresses transcriptional fidelity and oxidative stress sensitivity in <i>rpb9Δ</i> yeast
resolves10.1016/j.pep.2009.06.016Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II
resolves10.1074/jbc.M111.260844Interaction of RNA Polymerase II Fork Loop 2 with Downstream Non-template DNA Regulates Transcription Elongation
resolves10.1186/1741-7007-8-134The nucleotide addition cycle of RNA polymerase is controlled by two molecular hinges in the Bridge Helix domain
resolves10.1016/j.bpj.2010.08.010RNA Polymerase II with Open and Closed Trigger Loops: Active Site Dynamics and Nucleic Acid Translocation
resolves10.1002/prot.22560RNA polymerase II flexibility during translocation from normal mode analysis
resolves10.1534/genetics.105.052415Mutations in the <i>Saccharomyces cerevisiae RPB1</i> Gene Conferring Hypersensitivity to 6-Azauracil
resolves10.1042/BST0380428Nanomechanical constraints acting on the catalytic site of cellular RNA polymerases
resolves10.1021/bi200437qRNA Transcript 3′-Proximal Sequence Affects Translocation Bias of RNA Polymerase
resolves10.1038/emboj.2011.432Factor‐independent transcription pausing caused by recognition of the RNA–DNA hybrid sequence
resolves10.1093/nar/gki583Mapping of transcription start sites in
<i>Saccharomyces cerevisiae</i>
using 5′ SAGE
resolves10.1073/pnas.1016691108X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides
resolves10.1073/pnas.88.18.7983Spontaneous cleavage of RNA in ternary complexes of Escherichia coli RNA polymerase and its significance for the mechanism of transcription.
resolves10.1016/0092-8674(89)90576-XA suppressor of a HIS4 transcriptional defect encodes a protein with homology to the catalytic subunit of protein phosphatases
resolves10.1038/emboj.2008.165Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways
resolves10.1016/j.molcel.2008.08.010Futile Cycle of Transcription Initiation and Termination Modulates the Response to Nucleotide Shortage in S. cerevisiae
resolves10.1128/MCB.11.9.4669Mutations in the three largest subunits of yeast RNA polymerase II that affect enzyme assembly.
resolves10.1128/MCB.9.6.2341KEX2 mutations suppress RNA polymerase II mutants and alter the temperature range of yeast cell growth.
resolves10.1128/MCB.12.9.4142Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II.
resolves10.1128/MCB.11.11.5781Mutations in a conserved region of RNA polymerase II influence the accuracy of mRNA start site selection.
resolves10.1093/genetics/107.2.179MUTATIONS AFFECTING TY-MEDIATED EXPRESSION OF THE <i>HIS4</i> GENE OF <i>SACCHAROMYCES CEREVISIAE</i>
resolves10.1073/pnas.81.8.2431Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes.
resolves10.1128/MCB.14.1.226The sua8 suppressors of Saccharomyces cerevisiae encode replacements of conserved residues within the largest subunit of RNA polymerase II and affect transcription start site selection similarly to sua7 (TFIIB) mutations.
resolves10.1074/jbc.M502932200A Functional Role for the Switch 2 Region of Yeast RNA Polymerase II in Transcription Start Site Utilization and Abortive Initiation
resolves10.1128/MCB.24.9.3983-3991.2004Functional Interaction between TFIIB and the Rpb2 Subunit of RNA Polymerase II: Implications for the Mechanism of Transcription Initiation
resolves10.1101/gad.9.4.481RNA polymerase II subunit RPB9 is required for accurate start site selection.
resolves10.1093/nar/24.13.2560Functional interaction between TFIIB and the Rpb9 (Ssu73) subunit of RNA polymerase II in Saccharomyces cerevisiae
resolves10.1073/pnas.92.8.3127Identification of the gene (SSU71/TFG1) encoding the largest subunit of transcription factor TFIIF as a suppressor of a TFIIB mutation in Saccharomyces cerevisiae.
resolves10.1128/MCB.24.24.10975-10985.2004Amino Acid Substitutions in Yeast TFIIF Confer Upstream Shifts in Transcription Initiation and Altered Interaction with RNA Polymerase II
resolves10.1038/emboj.2009.386Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex
resolves10.1016/0092-8674(92)90040-JThe yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo
resolves10.1016/S0021-9258(18)43851-3Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast.
resolves10.1074/jbc.274.33.23203An Interaction between the N-terminal Region and the Core Domain of Yeast TFIIB Promotes the Formation of TATA-binding Protein-TFIIB-DNA Complexes
resolves10.1093/nar/gkf422The role of TFIIB-RNA polymerase II interaction in start site selection in yeast cells
resolves10.1074/jbc.273.28.17859The N-terminal Region of Yeast TFIIB Contains Two Adjacent Functional Domains Involved in Stable RNA Polymerase II Binding and Transcription Start Site Selection
resolves10.1101/gr.084970.108A canonical promoter organization of the transcription machinery and its regulators in the
<i>Saccharomyces</i>
genome
resolves10.1016/S1097-2765(04)00087-5A Genome-Wide Housekeeping Role for TFIID and a Highly Regulated Stress-Related Role for SAGA in Saccharomyces cerevisiae
resolves10.1038/nature10799Genome-wide structure and organization of eukaryotic pre-initiation complexes
resolves10.1038/nsmb1272The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
resolves10.1038/emboj.2009.401Architecture of the RNA polymerase II–TFIIF complex revealed by cross‐linking and mass spectrometry
resolves10.1093/nar/gks323Evidence that RNA polymerase II and not TFIIB is responsible for the difference in transcription initiation patterns between Saccharomyces cerevisiae and Schizosaccharomyces pombe
resolves10.1074/jbc.M601937200Quantitative Analysis of in Vivo Initiator Selection by Yeast RNA Polymerase II Supports a Scanning Model
resolves10.1126/science.2510298Initiation by Yeast RNA Polymerase II at the Adenoviral Major Late Promoter in Vitro
resolves10.1007/BF003517356-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae
resolves10.1261/rna.5390803Perturbation of transcription elongation influences the fidelity of internal exon inclusion in <i>Saccharomyces cerevisiae</i>
resolves10.1128/MCB.24.12.5534-5547.2004Genome-Wide Analysis of mRNA Stability Using Transcription Inhibitors and Microarrays Reveals Posttranscriptional Control of Ribosome Biogenesis Factors
resolves10.1002/yea.1068Large‐scale screening of yeast mutants for sensitivity to the IMP dehydrogenase inhibitor 6‐azauracil
resolves10.1074/jbc.M111433200Screening the Yeast “Disruptome” for Mutants Affecting Resistance to the Immunosuppressive Drug, Mycophenolic Acid
resolves10.1128/MCB.00380-08Properties of an Intergenic Terminator and Start Site Switch That Regulate <i>IMD2</i> Transcription in Yeast
resolves10.1128/MCB.02159-06Metabolic Regulation of <i>IMD2</i> Transcription and an Unusual DNA Element That Generates Short Transcripts
resolves10.1002/yea.1300Dissection of the molecular basis of mycophenolate resistance in <i>Saccharomyces cerevisiae</i>
resolves10.1074/jbc.M303736200Functional Distinctions between IMP Dehydrogenase Genes in Providing Mycophenolate Resistance and Guanine Prototrophy to Yeast
resolves10.1074/jbc.M011322200Analysis of Gene Induction and Arrest Site Transcription in Yeast with Mutations in the Transcription Elongation Machinery
resolves10.1074/jbc.M105075200Regulation of an IMP Dehydrogenase Gene and Its Overexpression in Drug-sensitive Transcription Elongation Mutants of Yeast
resolves10.1128/MCB.20.20.7427-7437.2000<i>Saccharomyces cerevisiae</i>
Transcription Elongation Mutants Are Defective in
<i>PUR5</i>
Induction in Response to Nucleotide Depletion
resolves10.1093/nar/gks340TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress
resolves10.1073/pnas.0507783103Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in
<i>Saccharomyces</i>
<i>cerevisiae</i>
resolves10.1101/gad.1367605Regulation of an intergenic transcript controls adjacent gene transcription in
<i>Saccharomyces cerevisiae</i>
resolves10.1038/nature02538Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
resolves10.1128/MCB.01083-10Transcription Regulation by the Noncoding RNA
<i>SRG1</i>
Requires Spt2-Dependent Chromatin Deposition in the Wake of RNA Polymerase II
resolves10.1128/EC.05141-11The Paf1 Complex Represses
<i>SER3</i>
Transcription in Saccharomyces cerevisiae by Facilitating Intergenic Transcription-Dependent Nucleosome Occupancy of the
<i>SER3</i>
Promoter
resolves10.1101/gad.1975011Intergenic transcription causes repression by directing nucleosome assembly
resolves10.1038/sj.emboj.7600433Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo
resolves10.1093/nar/gkq215The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
resolves10.1038/nrm3098Unravelling the means to an end: RNA polymerase II transcription termination
resolves10.1126/science.1219651CTD Tyrosine Phosphorylation Impairs Termination Factor Recruitment to RNA Polymerase II
resolves10.4161/trns.2.3.16298Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species
resolves10.1093/nar/gks377A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3
resolves10.1101/gad.5.4.683Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.
resolves10.1038/nature09652Nascent transcript sequencing visualizes transcription at nucleotide resolution
resolves10.1073/pnas.251664698Structural basis of transcription: α-Amanitin–RNA polymerase II cocrystal at 2.8 Å resolution
resolves10.1073/pnas.1130601100Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription
resolves10.1126/science.1090838Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms
resolves10.1016/j.cell.2005.07.017Inhibition of Bacterial RNA Polymerase by Streptolydigin: Stabilization of a Straight-Bridge-Helix Active-Center Conformation
resolves10.1038/nsmb1314Mechanism of transcriptional stalling at cisplatin-damaged DNA
resolves10.1038/nsmb.1458Structural basis of transcription inhibition by α-amanitin and implications for RNA polymerase II translocation
resolves10.1038/nature08548RNA polymerase II–TFIIB structure and mechanism of transcription initiation
resolves10.1126/science.1182015Structure of an RNA Polymerase II–TFIIB Complex and the Transcription Initiation Mechanism
resolves10.1038/nature09573Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
resolves10.1073/pnas.1002565107X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct
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