Reference health

Characterization of the complete mitochondrial genomes from Polycladida (Platyhelminthes) using next-generation sequencing

https://doi.org/10.1016/j.gene.2015.08.054
CiteStamped reference-health badge
44/44 checkable references clean · checked 2026-07-21

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 44 checked references that resolve
resolves10.1093/nar/gkq291
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
resolves10.1093/bioinformatics/btm468
CREx: inferring genomic rearrangements based on common intervals
resolves10.1016/j.ympev.2013.05.002
A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
resolves10.1016/j.ympev.2012.08.023
MITOS: Improved de novo metazoan mitochondrial genome annotation
resolves10.1007/BF00160240
Planarian mitochondria II. The unique genetic code as deduced from cytochrome c oxidase subunit I gene sequences
resolves10.1093/gbe/evr040
Evolutionary Patterns of the Mitochondrial Genome in Metazoa: Exploring the Role of Mutation and Selection in Mitochondrial Protein–Coding Genes
resolves10.1093/oxfordjournals.molbev.a026334
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
resolves10.2108/zsj.20.357
Discoplana malagasensis sp. nov., a New Turbellarian (Platyhelminthes: Polycladida: Leptoplanidae) Symbiotic in an Ophiuroid (Echinodermata), with a Cladistic Analysis of the Discoplana/Euplana species
resolves10.1016/j.cub.2015.03.034
A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms
resolves10.1016/j.ympev.2015.02.013
Elucidating the phylogenetic position of Gnathostomulida and first mitochondrial genomes of Gnathostomulida, Gastrotricha and Polycladida (Platyhelminthes)
resolves10.1093/bioinformatics/btt086
QUAST: quality assessment tool for genome assemblies
resolves10.1080/10635150590947843
Evidence for Multiple Reversals of Asymmetric Mutational Constraints during the Evolution of the Mitochondrial Genome of Metazoa, and Consequences for Phylogenetic Inferences
resolves10.1371/journal.pcbi.1000502
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
resolves10.1186/gb-2014-15-2-r34
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
resolves10.1017/S0031182006002010
The mitochondrial genome of<i>Gyrodactylus salaris</i>(Platyhelminthes: Monogenea), a pathogen of Atlantic salmon (<i>Salmo salar</i>)
resolves10.1093/nar/gkf436
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
resolves10.1093/nar/gkr771
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
resolves10.1186/s12983-014-0081-x
FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies
resolves10.1186/2041-9139-4-29
Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo
resolves10.1016/j.ode.2008.09.002
Phylogeny of Catenulida and support for Platyhelminthes
resolves10.1016/j.cub.2015.06.068
Spiralian Phylogeny Informs the Evolution of Microscopic Lineages
resolves10.7554/eLife.05503
Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation
resolves10.1016/S1471-4922(02)02252-3
Mitochondrial genomes of parasitic flatworms
resolves10.3347/kjp.2004.42.4.159
Codon usage and bias in mitochondrial genomes of parasitic platyhelminthes
resolves10.1111/j.1095-8312.1999.tb01918.x
The interrelationships of all major groups of Platyhelminthes: phylogenetic evidence from morphology and molecules
resolves10.1080/00222930903537074
When names are wrong and colours deceive: unravelling the <i>Pseudoceros bicolor</i> species complex (Turbellaria: Polycladida)
resolves10.1101/pdb.prot5448
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
resolves10.1093/bib/bbs012
Using Tablet for visual exploration of second-generation sequencing data
resolves10.1093/bioinformatics/bts174
IDBA-UD: a <i>de novo</i> assembler for single-cell and metagenomic sequencing data with highly uneven depth
resolves10.1007/BF01215182
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
resolves10.1038/nature09676
Acoelomorph flatworms are deuterostomes related to Xenoturbella
resolves10.1186/2041-9139-5-9
The diversity, development and evolution of polyclad flatworm larvae
resolves10.1111/j.1744-7410.2007.00119.x
Cotylea (Polycladida): a cladistic analysis of morphology
resolves10.1007/s00338-011-0745-3
Taxonomy and life history of the Acropora-eating flatworm Amakusaplana acroporae nov. sp. (Polycladida: Prosthiostomidae)
resolves10.1093/bioinformatics/btt117
freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers
resolves10.1093/nar/gku699
leeHom: adaptor trimming and merging for Illumina sequencing reads
resolves10.1016/j.ympev.2009.01.011
MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies
resolves10.2108/zsj.29.672
The Complete Mitochondrial Genome of<i>Dugesia japonica</i>(Platyhelminthes; Order Tricladida)
resolves10.1371/journal.pone.0120081
Evolutionary Analysis of Mitogenomes from Parasitic and Free-Living Flatworms
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1080/10635150802429642
A Rapid Bootstrap Algorithm for the RAxML Web Servers
resolves10.1093/molbev/msu143
Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia
resolves10.1073/pnas.97.21.11359
Changes in mitochondrial genetic codes as phylogenetic characters: Two examples from the flatworms
resolves10.1093/molbev/mst064
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
The 7 references without a DOI — listed, not checked
no DOI — not checkedMolecular phylogeny of the Platyhelminthes
no DOI — not checkedThe Polycladida, Turbellaria; Proposal and establishment of a new system. Part I. The Acotylea
no DOI — not checkedThe Polycladida, Turbellaria; Proposal and establishment of a new system. Part II. The Cotylea
no DOI — not checkedPhylum Platyhelminthes
no DOI — not checked10.1016/j.gene.2015.08.054_bb0180
no DOI — not checkedPlatyhelminthes
no DOI — not checkedTranscriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in Acanthocephala via an epizoic stage
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-21 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

view as graph · paper page

Embed this badge

Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.

<a href="https://citestamp.com/citestamped/10.1016/j.gene.2015.08.054"><img src="https://citestamp.com/citestamped/10.1016/j.gene.2015.08.054/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[![CiteStamped reference-health badge](https://citestamp.com/citestamped/10.1016/j.gene.2015.08.054/badge.svg)](https://citestamp.com/citestamped/10.1016/j.gene.2015.08.054)