Reference health
The Birth of Bio-Data Science: Trends, Expectations, and Applications
43/43 checkable references clean · checked 2026-07-14
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a publisher retraction, withdrawal, or removal notice.
7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 43 checked references that resolve
resolves10.1186/gb-2012-13-8-167
The tomato genome: implications for plant breeding, genomics and evolution
resolves10.1093/nar/gkx1158
Expression Atlas: gene and protein expression across multiple studies and organisms
resolves10.1093/nar/gks1262
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
resolves10.1021/acs.jproteome.6b00402
Advancing Clinical Proteomics via Analysis Based on Biological Complexes: A Tale of Five Paradigms
resolves10.1007/s10739-009-9221-0
Collecting, Comparing, and Computing Sequences: The Making of Margaret O. Dayhoff’s Atlas of Protein Sequence and Structure, 1954–1965
resolves10.1093/biostatistics/4.2.249
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
resolves10.1101/gr.8.3.175
Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment
resolves10.1016/j.neuron.2016.10.046
The Human Brain Project: Creating a European Research Infrastructure to Decode the Human Brain
resolves10.1371/journal.pcbi.1006144
Cloud computing applications for biomedical science: A perspective
resolves10.1186/1471-2105-14-S16-S6
Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes
resolves10.1371/journal.pcbi.1005755
Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
resolves10.1038/s41592-019-0426-7
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
resolves10.1093/bioinformatics/bty1050
A simple convolutional neural network for prediction of enhancer–promoter interactions with DNA sequence data
resolves10.1038/nmeth.3932
Confidence intervals are no salvation from the alleged fickleness of the P value
resolves10.1142/S0219720016500293
Evaluating feature-selection stability in next-generation proteomics
resolves10.1186/s13059-016-1114-x
A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence
resolves10.1016/j.drudis.2018.08.002
Turning straw into gold: building robustness into gene signature inference
The 7 references without a DOI — listed, not checked
no DOI — not checkedAI: the tumultuous history of the search for artificial intelligence
no DOI — not checkedNeural networks: a comprehensive foundation
no DOI — not checkedDeep learning
no DOI — not checkedIntroduction to reinforcement learning
no DOI — not checkedIt’s the effect size, stupid: what effect size is and why it is important. Annual Conference of the British Educational Research Association
no DOI — not checkedPrep the probability of replicating an effect. The encyclopedia of clinical psychology
no DOI — not checkedProtein complex-based analysis is resistant to the obfuscating consequences of batch effects – a case study in clinical proteomics
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carried a publisher retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-14 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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