Reference health
HASLR: Fast Hybrid Assembly of Long Reads
27/27 checkable references clean · checked 2026-07-23
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
8 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 27 checked references that resolve
resolves10.1093/bioinformatics/btv688
<scp>hybrid</scp>SPA<scp>des</scp>: an algorithm for hybrid assembly of short and long reads
resolves10.1089/cmb.2012.0021
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
resolves10.1186/1748-7188-8-22
Space-efficient and exact de Bruijn graph representation based on a Bloom filter
resolves10.1093/bioinformatics/bty544
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
resolves10.1093/gigascience/giz026
A hybrid
<i>de novo</i>
assembly of the sea pansy (
<i>Renilla muelleri</i>
) genome
resolves10.1038/nbt.2280
Hybrid error correction and de novo assembly of single-molecule sequencing reads
resolves10.1101/gr.215087.116
Canu: scalable and accurate long-read assembly via adaptive
<i>k</i>
-mer weighting and repeat separation
resolves10.1093/bioinformatics/btw152
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
resolves10.1093/bioinformatics/btv351
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
resolves10.1371/journal.pone.0112963
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
resolves10.1093/bioinformatics/btv383
Bandage: interactive visualization of
<i>de novo</i>
genome assemblies
resolves10.1371/journal.pcbi.1005595
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
resolves10.1038/srep31900
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
resolves10.1101/gr.074492.107
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
resolves10.1101/gr.213405.116
Hybrid assembly of the large and highly repetitive genome of
<i>Aegilops tauschii</i>
, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
The 8 references without a DOI — listed, not checked
no DOI — not checkedEfficient and high quality hybrid de novo assembly of human genomes
no DOI — not checkedChromosome-level hybrid de novo genome assemblies as an attainable option for non-model organisms
no DOI — not checkedHybrid genome assembly and annotation of Danionella translucida
no DOI — not checkedTelomere-to-telomere assembly of a complete human x chromosome
no DOI — not checkedEfficient local alignment discovery amongst noisy long reads
no DOI — not checkedFast and accurate long-read assembly with wtdbg2
no DOI — not checked10.1016/j.isci.2020.101389_bib25
no DOI — not checkedImproved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads
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checked 2026-07-23 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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