Reference health
Towards high quality real-time whole genome sequencing during outbreaks using Usutu virus as example
36/36 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
9 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 36 checked references that resolve
resolves10.2807/1560-7917.ES.2018.23.43.1800545
Increase in human West Nile and Usutu virus infections, Austria, 2018
resolves10.1093/ve/vew016
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases
resolves10.1089/cmb.2012.0021
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
resolves10.1371/annotation/6841c4e1-58e6-4412-9b71-bd6bc8bbe549
Correction: Epizootic Emergence of Usutu Virus in Wild and Captive Birds in Germany
resolves10.2807/1560-7917.ES.2017.22.4.30452
Widespread activity of multiple lineages of Usutu virus, western Europe, 2016
resolves10.1016/j.meegid.2017.03.022
Co-circulation of two Usutu virus strains in Northern Italy between 2009 and 2014
resolves10.2807/ese.14.50.19448-en
Usutu virus infection in a patient who underwent orthotropic liver transplantation, Italy, August-September 2009
resolves10.1093/nar/gkh340
MUSCLE: multiple sequence alignment with high accuracy and high throughput
resolves10.1016/j.meegid.2018.03.020
Emergence of two Usutu virus lineages in Culex pipiens mosquitoes in the Camargue, France, 2015
resolves10.1128/mBio.01938-15
Reconstruction of the Evolutionary History and Dispersal of Usutu Virus, a Neglected Emerging Arbovirus in Europe and Africa
resolves10.1089/vbz.2011.0813
Detection of Usutu-Virus-Specific IgG in Blood Donors from Northern Italy
resolves10.1016/j.cmi.2016.09.019
Usutu virus infections in humans: a retrospective analysis in the municipality of Modena, Italy
resolves10.1007/s00705-015-2732-4
Detection and genetic characterization of a novel parvovirus distantly related to human bufavirus in domestic pigs
resolves10.2144/000114133
Library construction for next-generation sequencing: Overviews and challenges
resolves10.1111/tbed.12025
Usutu Virus in Blackbirds (<i>Turdus merula</i>), Czech Republic, 2011-2012
resolves10.1093/bioinformatics/bts199
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
resolves10.3201/eid2312.171257
Distribution of Usutu Virus in Germany and Its Effect on Breeding Bird Populations
resolves10.1093/molbev/msu300
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1016/j.jviromet.2013.08.039
Development of a Usutu virus specific real-time reverse transcription PCR assay based on sequenced strains from Africa and Europe
resolves10.2807/ese.14.50.19446-en
First human case of Usutu virus neuroinvasive infection, Italy, August-September 2009
resolves10.1038/srep13617
Whole-genome Sequencing for Tracing the Transmission Link between Two ARD Outbreaks Caused by a Novel HAdV Serotype 7 Variant, China
resolves10.1038/nprot.2017.066
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
resolves10.2807/1560-7917.ES.2016.21.45.30391
Widespread Usutu virus outbreak in birds in the Netherlands, 2016
resolves10.1056/NEJMoa1804498
Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018
resolves10.1080/00034983.1964.11686258
The Isolation of West Nile Virus from Man and of Usutu Virus from the Bird-Biting Mosquito<i>Mansonia Aurites</i>(Theobald) in the Entebbe Area of Uganda
The 9 references without a DOI — listed, not checked
no DOI — not checked10.1016/j.meegid.2019.04.015_bb0030
no DOI — not checkedGenomic and epidemiological monitoring of yellow fever virus transmission potential
no DOI — not checked10.1016/j.meegid.2019.04.015_bb0100
no DOI — not checked10.1016/j.meegid.2019.04.015_bb0130
no DOI — not checkedReview of applications of high-throughput sequencing in personalised medicine: barriers and facilitators of future progress in research and clinical application
no DOI — not checkedCharacterization of MinION nanopore data for resequencing analyses
no DOI — not checked10.1016/j.meegid.2019.04.015_bb0195
no DOI — not checked10.1016/j.meegid.2019.04.015_bb0200
no DOI — not checkedViral population analysis and minority-variant detection using short read next-generation sequencing
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