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Phytochrome-interacting factor from Arabidopsis to liverwort

https://doi.org/10.1016/j.pbi.2016.11.004
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70/70 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 70 checked references that resolve
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PIFs: Systems Integrators in Plant Development
resolves10.1016/j.tplants.2016.05.009
Phytochromes: More Than Meets the Eye
resolves10.1038/ncomms8852
Phytochrome diversity in green plants and the origin of canonical plant phytochromes
resolves10.7554/eLife.13292
PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis
resolves10.1016/j.devcel.2015.10.008
Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci
resolves10.1073/pnas.1310631110
PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS
resolves10.1016/j.pbi.2004.09.010
Light-regulated nuclear localization of phytochromes
resolves10.1093/jxb/erm145
Light-regulated nucleo-cytoplasmic partitioning of phytochromes
resolves10.1111/j.1365-313X.2012.05114.x
Phytochrome B inhibits binding of phytochrome‐interacting factors to their target promoters
resolves10.1101/gad.187849.112
Linking photoreceptor excitation to changes in plant architecture
resolves10.1038/ncomms11545
Evidence that phytochrome functions as a protein kinase in plant light signalling
resolves10.1105/tpc.113.112342
Multisite Light-Induced Phosphorylation of the Transcription Factor PIF3 Is Necessary for Both Its Rapid Degradation and Concomitant Negative Feedback Modulation of Photoreceptor phyB Levels in <i>Arabidopsis</i>    
resolves10.1016/j.molcel.2006.06.011
Photoactivated Phytochrome Induces Rapid PIF3 Phosphorylation Prior to Proteasome-Mediated Degradation
resolves10.1126/science.1250778
A mutually assured destruction mechanism attenuates light signaling in <i>Arabidopsis</i>
resolves10.1038/ncomms8245
CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1
resolves10.1007/s10059-013-0135-5
Phytochrome-Interacting Factors Have Both Shared and Distinct Biological Roles
resolves10.1105/tpc.104.025163
PIL5, a Phytochrome-Interacting Basic Helix-Loop-Helix Protein, Is a Key Negative Regulator of Seed Germination in<i>Arabidopsis thaliana</i> [W]
resolves10.1016/j.cub.2009.01.046
High Temperature-Mediated Adaptations in Plant Architecture Require the bHLH Transcription Factor PIF4
resolves10.1073/pnas.0812219106
Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors
resolves10.1016/j.cub.2008.10.058
Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness
resolves10.1007/s11103-009-9571-1
A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy
resolves10.1105/tpc.113.121657
COP1 and phyB Physically Interact with PIL1 to Regulate Its Stability and Photomorphogenic Development in<i>Arabidopsis</i> 
resolves10.1073/pnas.1511437113
Cryptochrome 1 interacts with PIF4 to regulate high temperature-mediated hypocotyl elongation in response to blue light
resolves10.1016/j.cell.2015.12.018
Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light
resolves10.1111/j.1365-313X.2007.03341.x
Phytochrome‐mediated inhibition of shade avoidance involves degradation of growth‐promoting bHLH transcription factors
resolves10.1073/pnas.1603745113
Molecular convergence of clock and photosensory pathways through PIF3–TOC1 interaction and co-occupancy of target promoters
resolves10.1105/tpc.15.00444
The Transcriptional Coregulator LEUNIG_HOMOLOG Inhibits Light-Dependent Seed Germination in Arabidopsis
resolves10.1105/tpc.112.097022
Transposase-Derived Proteins FHY3/FAR1 Interact with PHYTOCHROME-INTERACTING FACTOR1 to Regulate Chlorophyll Biosynthesis by Modulating <i>HEMB1</i> during Deetiolation in <i>Arabidopsis</i>
resolves10.1105/tpc.108.064691
Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in<i>Arabidopsis</i> 
resolves10.1093/mp/ssu087
Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis
resolves10.1371/journal.pgen.1003244
A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis
resolves10.1038/ncb2545
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses
resolves10.1111/j.1365-313X.2012.05033.x
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
resolves10.1105/tpc.16.00125
PIF1-Interacting Transcription Factors and Their Binding Sequence Elements Determine the in Vivo Targeting Sites of PIF1
resolves10.1111/tpj.13094
Tomato fruit carotenoid biosynthesis is adjusted to actual ripening progression by a light‐dependent mechanism
resolves10.1073/pnas.0914428107
Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors
resolves10.1271/bbb.60643
Characterization of a Set of Phytochrome-Interacting Factor-Like bHLH Proteins in<i>Oryza sativa</i>
resolves10.1016/j.bbagrm.2015.12.008
Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B
resolves10.1073/pnas.1207324109
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress
resolves10.1016/S1672-6308(12)60050-X
Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction
resolves10.1111/jipb.12137
Overexpression of <i>OsPIL15</i>, a phytochrome‐interacting factor‐like protein gene, represses etiolated seedling growth in rice
resolves10.1093/jxb/erw217
Evolutionary divergence of phytochrome protein function in<i>Zea mays</i>PIF3 signaling
resolves10.1007/s11103-015-0288-z
A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice
resolves10.1105/tpc.15.01063
Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort <i>Marchantia polymorpha</i>
resolves10.1007/s10265-015-0724-9
Phytochrome-mediated regulation of cell division and growth during regeneration and sporeling development in the liverwort Marchantia polymorpha
resolves10.1105/tpc.111.094201
<i>Arabidopsis</i> Phytochrome A Is Modularly Structured to Integrate the Multiple Features That Are Required for a Highly Sensitized Phytochrome
resolves10.1105/tpc.112.104331
An Evolutionarily Conserved Signaling Mechanism Mediates Far-Red Light Responses in Land Plants  
resolves10.1073/pnas.1201744109
Distinct phytochrome actions in nonvascular plants revealed by targeted inactivation of phytobilin biosynthesis
resolves10.1016/S0092-8674(00)81636-0
PIF3, a Phytochrome-Interacting Factor Necessary for Normal Photoinduced Signal Transduction, Is a Novel Basic Helix-Loop-Helix Protein
resolves10.1104/pp.113.234245
Rapid Decline in Nuclear COSTITUTIVE PHOTOMORPHOGENESIS1 Abundance Anticipates the Stabilization of Its Target ELONGATED HYPOCOTYL5 in the Light
resolves10.1111/tpj.12226
<scp>COP</scp>1 re‐accumulates in the nucleus under shade
resolves10.1105/tpc.114.134775
Light-Activated Phytochrome A and B Interact with Members of the SPA Family to Promote Photomorphogenesis in Arabidopsis by Reorganizing the COP1/SPA Complex
resolves10.1016/j.molp.2014.11.025
Red-Light-Dependent Interaction of phyB with SPA1 Promotes COP1–SPA1 Dissociation and Photomorphogenic Development in Arabidopsis
resolves10.1371/journal.pgen.1005516
Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis
resolves10.1007/s00425-016-2509-3
SPA proteins: SPAnning the gap between visible light and gene expression
resolves10.1111/j.1365-313X.2006.02773.x
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis
resolves10.1111/j.1365-313X.2005.02606.x
PIF1 is regulated by light‐mediated degradation through the ubiquitin‐26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis
resolves10.1126/science.1099728
PHYTOCHROME-INTERACTING FACTOR 1 Is a Critical bHLH Regulator of Chlorophyll Biosynthesis
resolves10.1038/nature02174
Gating of the rapid shade-avoidance response by the circadian clock in plants
resolves10.1105/tpc.021568
Constitutive Photomorphogenesis 1 and Multiple Photoreceptors Control Degradation of Phytochrome Interacting Factor 3, a Transcription Factor Required for Light Signaling in Arabidopsis
resolves10.1093/pcp/pch125
Degradation of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signaling
resolves10.1105/tpc.014498
Functional Characterization of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signal Transduction
resolves10.1073/pnas.0811684106
PIF3 is a repressor of chloroplast development
resolves10.1093/emboj/21.10.2441
PIF4, a phytochrome‐interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis
resolves10.1038/ncomms5636
Phytochrome-interacting transcription factors PIF4 and PIF5 induce leaf senescence in Arabidopsis
resolves10.1104/pp.107.105601
Phytochrome Induces Rapid PIF5 Phosphorylation and Degradation in Response to Red-Light Activation
resolves10.1105/tpc.104.025643
A Novel Molecular Recognition Motif Necessary for Targeting Photoactivated Phytochrome Signaling to Specific Basic Helix-Loop-Helix Transcription Factors[W]
resolves10.1093/pcp/pch124
Circadian-Controlled Basic/Helix-Loop-Helix Factor, PIL6, Implicated in Light-Signal Transduction in Arabidopsis thaliana
resolves10.1105/tpc.107.052142
The <i>Arabidopsis</i> Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels
resolves10.1016/j.tplants.2010.08.003
PIFs: pivotal components in a cellular signaling hub
The 2 references without a DOI — listed, not checked
no DOI — not checkedCell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl
no DOI — not checkedRegulation of carotenoid biosynthesis by shade relies on specific subsets of antagonistic transcription factors and cofactors
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