Reference health
A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta)
61/61 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 61 checked references that resolve
resolves10.1093/molbev/msn187
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
resolves10.1093/gbe/evp040
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
resolves10.1639/0007-2745(2007)110[533:TAPITE]2.0.CO;2
Taxonomy and phylogeny in the earliest diverging pleurocarps: square holes and bifurcating pegs
resolves10.1111/j.2517-6161.1995.tb02031.x
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
resolves10.1105/tpc.021410
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
resolves10.1105/tpc.021345
Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes[W]
resolves10.1017/S1477200004001410
Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales
resolves10.1093/molbev/msu296
Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes
resolves10.1093/bioinformatics/btp348
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
resolves10.1093/molbev/mss162
Evolutionary Dynamics and Functional Specialization of Plant Paralogs Formed by Whole and Small-Scale Genome Duplications
resolves10.3732/ajb.0900384
Inferring the higher‐order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set
resolves10.1093/molbev/msn001
Positive Selection and Expression Divergence Following Gene Duplication in the Sunflower CYCLOIDEA Gene Family
resolves10.1007/BF00986338
The internal transcribed spacer 2 region of the nuclear ribosomal DNA and the phylogeny of the moss family Hylocomiaceae
resolves10.1111/j.1558-5646.2009.00615.x
CORRELATED EVOLUTION OF SEXUAL SYSTEM AND LIFE-HISTORY TRAITS IN MOSSES
resolves10.1093/bioinformatics/btq315
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
resolves10.1111/j.1475-4983.2011.01111.x
Permian bryophytes of Western Gondwanaland from the Paraná Basin in Brazil
resolves10.1146/annurev.arplant.043008.092122
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
resolves10.1093/bioinformatics/bts565
CD-HIT: accelerated for clustering the next-generation sequencing data
resolves10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome
resolves10.1038/nprot.2013.084
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
resolves10.1179/1743282012Y.0000000013
Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales
resolves10.1111/j.1095-8339.2012.01322.x
Phylogenetic position and delimitation of the moss family Plagiotheciaceae in the order Hypnales
resolves10.1098/rstb.2013.0355
Polyploidy-associated genome modifications during land plant evolution
resolves10.1186/1471-2105-11-431
Hidden Markov model speed heuristic and iterative HMM search procedure
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.2307/3244546
Growth Form, Branching Pattern, and Perichaetial Position in Mosses: Cladocarpy and Pleurocarpy Redefined
resolves10.1038/ncomms6134
Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts
resolves10.1073/pnas.1319929111
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
resolves10.1186/1756-0500-3-320
A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data
resolves10.1371/journal.pone.0009490
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
resolves10.1186/1471-2148-7-130
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens
resolves10.1111/j.0014-3820.2003.tb00235.x
PHYLOGENETIC EVIDENCE OF A RAPID RADIATION OF PLEUROCARPOUS MOSSES (BRYOPHYTA)
resolves10.1093/bioinformatics/btv351
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
resolves10.1093/bioinformatics/btm619
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
resolves10.1002/j.1537-2197.1986.tb09699.x
STRUCTURALLY PRESERVED FOSSIL PLANTS FROM ANTARCTICA: II. A PERMIAN MOSS FROM THE TRANSANTARCTIC MOUNTAINS
resolves10.1111/j.1469-8137.2011.03916.x
Evidence of function for conserved noncoding sequences in <i>Arabidopsis thaliana</i>
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1371/journal.pone.0021800
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
resolves10.1093/nar/gkl315
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
resolves10.1093/molbev/msv081
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
resolves10.1093/molbev/msu245
Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
resolves10.1016/S1672-0229(07)60007-2
KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging
The 5 references without a DOI — listed, not checked
no DOI — not checkedCrosby, M.R., Magill, R.E., Allen, B., He, S., 1999. A checklist of the Mosses [WWW Document]. <http://www.mobot.org/MOBOT/tropicos/most/checklist.shtml> (accessed 8.28.15).
no DOI — not checkedFraley, C., Raftery, A.E., Murphy, T.B., Scrucca, L., 2012. mclust Version 4 for R: Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation.
no DOI — not checked10.1016/j.ympev.2016.01.008_b0130
no DOI — not checkedA codon-based model of nucleotide substitution for protein-coding DNA sequences
no DOI — not checkedDating the diversification of the pleurocarpous mosses
What this badge says. CiteStamped means the CHECKABLE references of this
work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
Embed this badge
Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.
<a href="https://citestamp.com/citestamped/10.1016/j.ympev.2016.01.008"><img src="https://citestamp.com/citestamped/10.1016/j.ympev.2016.01.008/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[](https://citestamp.com/citestamped/10.1016/j.ympev.2016.01.008)