Reference health
Combined Deterministic and Stochastic Processes Control Microbial Succession in Replicate Granular Biofilm Reactors
1 of 70 checkable references need attention · checked 2026-07-23
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1101/074161v1.article-info
The 69 checked references that resolve
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Challenges in microbial ecology: building predictive understanding of community function and dynamics
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Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist
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Microbial community dynamics in replicate membrane bioreactors – Natural reproducible fluctuations
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Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters
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Long-term monitoring reveals stable and remarkably similar microbial communities in parallel full-scale biogas reactors digesting energy crops
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New steady-state microbial community compositions and process performances in biogas reactors induced by temperature disturbances
resolves10.1016/j.biombioe.2014.04.020
Electricity generation and microbial community structure of air-cathode microbial fuel cells powered with the organic fraction of municipal solid waste and inoculated with different seeds
resolves10.1021/acs.est.5b02740
Management of Microbial Communities through Transient Disturbances Enhances the Functional Resilience of Nitrifying Gas-Biofilters to Future Disturbances
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Replicability of Bacterial Communities in Denitrifying Bioreactors as Measured by PCR/T-RFLP Analysis
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High reproducibility of ammonia-oxidizing bacterial communities in parallel sequential batch reactors
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Nonrandom Assembly of Bacterial Populations in Activated Sludge Flocs
resolves10.1128/mBio.00584-12
Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community
resolves10.1021/es8026488
Effect of Sludge Age on the Bacterial Diversity of Bench Scale Sequencing Batch Reactors
resolves10.1186/s13068-014-0146-2
A metagenomic study of the microbial communities in four parallel biogas reactors
resolves10.1007/s00253-015-7062-7
Reactor performances and microbial communities of biogas reactors: effects of inoculum sources
resolves10.1016/j.chemosphere.2017.01.129
A review: Driving factors and regulation strategies of microbial community structure and dynamics in wastewater treatment systems
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Insights into microbial diversity in wastewater treatment systems: How far have we come?
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Aerobic granular sludge technology: Mechanisms of granulation and biotechnological applications
resolves10.1007/s00253-018-8990-9
The mechanisms of granulation of activated sludge in wastewater treatment, its optimization, and impact on effluent quality
resolves10.1080/09593330.2018.1452985
A comparison of aerobic granular sludge with conventional and compact biological treatment technologies
resolves10.1016/S0043-1354(01)00379-7
The essential role of hydrodynamic shear force in the formation of biofilm and granular sludge
resolves10.3389/fmicb.2017.00770
Microbial Population Dynamics and Ecosystem Functions of Anoxic/Aerobic Granular Sludge in Sequencing Batch Reactors Operated at Different Organic Loading Rates
resolves10.1016/j.biortech.2017.12.038
Shifts in bacterial community composition and abundance of nitrifiers during aerobic granulation in two nitrifying sequencing batch reactors
resolves10.1111/1574-6941.12326
Linking bacterial population dynamics and nutrient removal in the granular sludge biofilm ecosystem engineered for wastewater treatment
resolves10.1016/j.biortech.2018.01.147
Performance and microbial community structure of a polar Arctic Circle aerobic granular sludge system operating at low temperature
resolves10.1128/AEM.01043-13
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
resolves10.1101/081257
UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
resolves10.1093/bioinformatics/btv401
Error filtering, pair assembly and error correction for next-generation sequencing reads
resolves10.1186/s12859-015-0749-z
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment
resolves10.1371/journal.pone.0009490
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
resolves10.1371/journal.pone.0132783
Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
resolves10.3402/mehd.v26.27663
Analysis of composition of microbiomes: a novel method for studying microbial composition
resolves10.1038/ismej.2013.54
A meta-analysis of changes in bacterial and archaeal communities with time
resolves10.1371/journal.pone.0100014
Distance-Based Functional Diversity Measures and Their Decomposition: A Framework Based on Hill Numbers
resolves10.1038/ismej.2013.93
Quantifying community assembly processes and identifying features that impose them
resolves10.1093/femsec/fiw134
Unravelling the interactions among microbial populations found in activated sludge during biofilm formation
resolves10.1080/08927014.2014.976206
Mini-review: Microbial coaggregation: ubiquity and implications for biofilm development
resolves10.3389/fmicb.2012.00332
Bacterial Selection during the Formation of Early-Stage Aerobic Granules in Wastewater Treatment Systems Operated Under Wash-Out Dynamics
resolves10.1007/s00253-015-6964-8
Role of extracellular polymeric substances (EPS) production in bioaggregation: application to wastewater treatment
resolves10.1007/s00253-018-8905-9
Microbial community structure and function in aerobic granular sludge
resolves10.1080/10826068.2013.835734
SCREENING OF ASSIMILATORY AND DISSIMILATORY DENITRIFYING MICROBES ISOLATED FROM NITRATE-CONTAMINATED WATER AND SOIL
resolves10.1021/acs.est.6b06344
Linking Microbial Community, Environmental Variables, and Methanogenesis in Anaerobic Biogas Digesters of Chemically Enhanced Primary Treatment Sludge
resolves10.7717/peerj.1182
Response of the rare biosphere to environmental stressors in a highly diverse ecosystem (Zodletone spring, OK, USA)
resolves10.1128/mBio.01371-14
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
resolves10.1111/1462-2920.13849
Assembly of microbial communities in replicate nutrient‐cycling model ecosystems follows divergent trajectories, leading to alternate stable states
resolves10.1111/mec.13784
Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem
resolves10.1186/s13568-017-0471-5
Comparison of the bacterial community composition in the granular and the suspended phase of sequencing batch reactors
resolves10.1111/mec.14218
Biogeography and ecological diversity patterns of rare and abundant bacteria in oil‐contaminated soils
resolves10.1016/j.tree.2011.03.024
The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten
resolves10.1111/mec.14478
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
resolves10.1371/journal.pcbi.1003531
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
resolves10.1038/s41564-018-0242-3
Strain-level diversity drives alternative community types in millimetre-scale granular biofilms
resolves10.1007/s00253-014-6134-4
Diversity and dynamics of dominant and rare bacterial taxa in replicate sequencing batch reactors operated under different solids retention time
resolves10.1186/s13068-015-0309-9
Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery
resolves10.1038/ismej.2007.45
Experimental demonstration of chaotic instability in biological nitrification
resolves10.3390/w8050172
Effects of Wash-Out Dynamics on Nitrifying Bacteria in Aerobic Granular Sludge During Start-Up at Gradually Decreased Settling Time
The 5 references without a DOI — listed, not checked
no DOI — not checkedThe Unified Neutral Theory of Biodiversity and Biogeography
no DOI — not checkedStandard Methods for the Examination of Water and Wastewater
no DOI — not checkedOksanen, F.; Blanchet, G.; Friendly, M.; Kindt, R.; Legendre, P.; McGlinn, D.; Minchin, P.; O’Hara, R.; Simpson, G.; Solymos, P. Vegan: Community Ecology Package. R package version 2.4–4. In http://r-forge.r-project.org/projects/vegan/: 2017.
no DOI — not checkedref46/cit46
no DOI — not checkedJones, E.; Oliphant, T.; Peterson, P. SciPy: Open source scientific tools for Python. In http://www.scipy.org, 2001.
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