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Effects of Traveling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies

https://doi.org/10.1021/pr300775k
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1 of 41 checkable references need attention · checked 2026-08-19

At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.

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References needing attention

does not resolve to a known work10.1021/pr300776k
The 40 checked references that resolve
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Quantitation in Mass-Spectrometry-Based Proteomics
resolves10.1038/nmeth725
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resolves10.1021/pr0255708
Properties of <sup>13</sup>C-Substituted Arginine in Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)
resolves10.1021/ac0262560
Tandem Mass Tags:  A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS
resolves10.1002/pmic.201000553
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resolves10.1074/mcp.M500061-MCP200
Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
resolves10.1002/pmic.200800562
The detection, correlation, and comparison of peptide precursor and product ions from data independent LC‐MS with data dependant LC‐MS/MS
resolves10.1074/mcp.O111.016717
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
resolves10.1002/pmic.201000661
Quantification of proteins using data‐independent analysis (MS<sup>E</sup>) in simple andcomplex samples: A systematic evaluation
resolves10.1021/ac048455k
Quantitative Proteomic Analysis by Accurate Mass Retention Time Pairs
resolves10.1074/mcp.M500230-MCP200
Absolute Quantification of Proteins by LCMSE
resolves10.1002/pmic.200800564
Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures
resolves10.1021/pr1011312
Using Ion Mobility Data to Improve Peptide Identification: Intrinsic Amino Acid Size Parameters
resolves10.1093/bioinformatics/btq245
Machine learning based prediction for peptide drift times in ion mobility spectrometry
resolves10.1038/nmeth0905-647
Valid data from large-scale proteomics studies
resolves10.1021/pr070203n
In-Depth Proteomic Profiling of the Normal Human Kidney Glomerulus Using Two-Dimensional Protein Prefractionation in Combination with Liquid Chromatography-Tandem Mass Spectrometry
resolves10.1021/pr101060v
More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS
resolves10.1007/978-1-59745-028-7_15
Use of Gas-Phase Fractionation to Increase Protein Identifications
resolves10.1021/ac991133+
Accurate Mass Multiplexed Tandem Mass Spectrometry for High-Throughput Polypeptide Identification from Mixtures
resolves10.1021/ac900888s
Precursor Acquisition Independent From Ion Count: How to Dive Deeper into the Proteomics Ocean
resolves10.1038/nmeth705
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
resolves10.1074/mcp.M110.001537
Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation
resolves10.1021/ac030107f
Development of High-Sensitivity Ion Trap Ion Mobility Spectrometry Time-of-Flight Techniques:  A High-Throughput Nano-LC-IMS-TOF Separation of Peptides Arising from a <i>Drosophila</i> Protein Extract
resolves10.1021/pr060232i
Toward Plasma Proteome Profiling with Ion Mobility-Mass Spectrometry
resolves10.1021/pr050038g
Mapping the Proteome of<i>Drosophila</i><i>m</i><i>elanogaster</i>:  Analysis of Embryos and Adult Heads by LC−IMS−MS Methods
resolves10.1021/ac0000170
Mobility Labeling for Parallel CID of Ion Mixtures
resolves10.1021/pr900888b
An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies
resolves10.1007/s00216-012-6197-y
Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samples
resolves10.1016/S1044-0305(98)00101-9
Gas-phase separations of protease digests
resolves10.1146/annurev.anchem.1.031207.113001
Biomolecule Analysis by Ion Mobility Spectrometry
resolves10.1021/ac970526a
An Ion Trap Interface for ESI−Ion Mobility Experiments
resolves10.1021/ac300452j
Improved Ion Mobility Resolving Power with Increased Buffer Gas Pressure
resolves10.1002/pmic.201000576
Simulating and validating proteomics data and search results
resolves10.1021/ac802431q
High-Pressure Ion Mobility Spectrometry
resolves10.1021/ac048315a
High-Sensitivity Ion Mobility Spectrometry/Mass Spectrometry Using Electrodynamic Ion Funnel Interfaces
resolves10.1021/ac010295e
Collision-Induced Dissociation of Mobility-Separated Ions Using an Orifice-Skimmer Cone at the Back of a Drift Tube
resolves10.1002/(SICI)1097-0231(19971030)11:16<1813::AID-RCM87>3.0.CO;2-D
A novel ion funnel for focusing ions at elevated pressure using electrospray ionization mass spectrometry
resolves10.1002/mas.20232
The ion funnel: Theory, implementations, and applications
resolves10.1002/jms.207
An introduction to quadrupole–time‐of‐flight mass spectrometry
resolves10.1038/nature02046
Global analysis of protein expression in yeast
The 1 reference without a DOI — listed, not checked
no DOI — not checkedref33/cit33
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