Reference health
Metatranscriptomic insights on gene expression and regulatory controls in <i>Candidatus</i> Accumulibacter phosphatis
60/60 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 60 checked references that resolve
resolves10.1093/bioinformatics/btu638
HTSeq—a Python framework to work with high-throughput sequencing data
resolves10.1111/j.1574-6968.2007.00965.x
Transcript and protein level analyses of the interactions among PhoB, PhoR, PhoU and CreC in response to phosphate starvation in<i>Escherichia coli</i>
resolves10.1093/bioinformatics/14.1.48
Combining evidence using p-values: application to sequence homology searches.
resolves10.1128/aem.61.5.1910-1916.1995
Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
resolves10.1128/aem.54.9.2325-2327.1988
Determination of Poly-β-Hydroxybutyrate and Poly-β-Hydroxyvalerate in Activated Sludge by Gas-Liquid Chromatography
resolves10.1128/AEM.66.3.1175-1182.2000
Identification of Polyphosphate-Accumulating Organisms and Design of 16S rRNA-Directed Probes for Their Detection and Quantitation
resolves10.2175/106143098X126900
Development of a revised metabolic model for the growth of phosphorus‐accumulating organisms
resolves10.1038/ismej.2013.117
Comparative genomics of two ‘<i>Candidatus</i> Accumulibacter’ clades performing biological phosphorus removal
resolves10.1111/j.1758-2229.2009.00090.x
Denitrification capabilities of two biological phosphorus removal sludges dominated by different ‘
<i>Candidatus</i>
Accumulibacter’ clades
resolves10.1038/nbt1247
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
resolves10.1016/j.ymeth.2007.01.002
Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands
resolves10.1038/nmeth.2762
Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
resolves10.1111/j.1462-2920.2010.02163.x
Metatranscriptomic array analysis of ‘
<i>Candidatus</i>
Accumulibacter phosphatis’‐enriched enhanced biological phosphorus removal sludge
resolves10.1038/ismej.2010.127
‘
<i>Candidatus</i>
Accumulibacter’ gene expression in response to dynamic EBPR conditions
resolves10.1128/JB.00990-06
Characterization of the Carboxysomal Carbonic Anhydrase CsoSCA from
<i>Halothiobacillus neapolitanus</i>
resolves10.1016/S0043-1354(00)00092-0
Anaerobic metabolism of bacteria performing enhanced biological phosphate removal
resolves10.1016/S0723-2020(99)80055-1
Enrichment, Phylogenetic Analysis and Detection of a Bacterium That Performs Enhanced Biological Phosphate Removal in Activated Sludge
resolves10.1371/journal.pgen.1004837
Global Analysis of Photosynthesis Transcriptional Regulatory Networks
resolves10.1128/JB.01723-08
Polyhydroxyalkanoate Granules Are Complex Subcellular Organelles (Carbonosomes)
resolves10.1061/(ASCE)EE.1943-7870.0000781
<i>Candidatus</i>
Accumulibacter phosphatis: Elusive Bacterium Responsible for Enhanced Biological Phosphorus Removal
resolves10.1038/nature01644
Sequencing and comparison of yeast species to identify genes and regulatory elements
resolves10.1016/j.bbrc.2013.10.150
Crystal structure of (R)-3-hydroxybutyryl-CoA dehydrogenase PhaB from Ralstonia eutropha
resolves10.1093/bioinformatics/bts611
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1128/MMBR.63.1.21-53.1999
Metabolic Engineering of Poly(3-Hydroxyalkanoates): From DNA to Plastic
resolves10.1021/es502642b
Genome Reconstruction and Gene Expression of “<i>Candidatus</i> Accumulibacter phosphatis” Clade IB Performing Biological Phosphorus Removal
resolves10.1016/S0043-1354(98)00129-8
Microbiology and biochemistry of the enhanced biological phosphate removal process
resolves10.1016/j.copbio.2011.11.027
Microbial communities involved in enhanced biological phosphorus removal from wastewater — a model system in environmental biotechnology
resolves10.1016/j.watres.2010.06.071
Incorporating microbial ecology into the metabolic modelling of polyphosphate accumulating organisms and glycogen accumulating organisms
resolves10.1128/JB.187.12.4238-4244.2005
Crystal Structure of the “PhoU-Like” Phosphate Uptake Regulator from
<i>Aquifex aeolicus</i>
resolves10.1111/j.1432-1033.1993.tb18172.x
Cloning and nucleotide sequence of the <i>gcv</i> operon encoding the <i>Escherichia coli</i> glycine‐cleavage system
resolves10.1186/1471-2180-11-262
The streptococcal collagen-like protein-1 (Scl1) is a significant determinant for biofilm formation by group a Streptococcus
resolves10.1111/mmi.12125
The group <scp>A</scp> streptococcal collagen‐like protein‐1, <scp><scp>Scl1</scp></scp>, mediates biofilm formation by targeting the extra domain <scp>A</scp>‐containing variant of cellular fibronectin expressed in wounded tissue
resolves10.1016/S0021-9258(19)84825-1
Poly-β-hydroxybutyrate (PHB) biosynthesis in Alcaligenes eutrophus H16
resolves10.1099/00221287-148-8-2413
Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16
resolves10.1128/mr.42.3.614-659.1978
Enzymology, genetics, and regulation of membrane phospholipid synthesis in Escherichia coli
resolves10.1111/j.1574-6968.2007.00839.x
Proton motive force generation from stored polymers for the uptake of acetate under anaerobic conditions
resolves10.1101/gr.079715.108
Principles of transcriptional regulation and evolution of the metabolic system in<i>E. coli</i>
resolves10.1111/1462-2920.12582
Expanding our view of genomic diversity in
<scp>
<i>C</i>
</scp>
<i>andidatus</i>
<scp>A</scp>
ccumulibacter clades
resolves10.1534/genetics.107.085399
The Cost of Expression of
<i>Escherichia coli lac</i>
Operon Proteins Is in the Process, Not in the Products
resolves10.1042/BJ20040792
The strong efficiency of the <i>Escherichia coli gapA</i> P1 promoter depends on a complex combination of functional determinants
resolves10.1111/j.1462-2920.2009.02007.x
Radiolabelled proteomics to determine differential functioning of
<i>Accumulibacter</i>
during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal
resolves10.1038/ismej.2008.38
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal
resolves10.1371/journal.pone.0001778
Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment
resolves10.1016/j.jsb.2014.01.003
Bacterial collagen-like proteins that form triple-helical structures
resolves10.1016/j.watres.2008.12.008
Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs)
The 5 references without a DOI — listed, not checked
no DOI — not checkedImage Processing with ImageJ
no DOI — not checkedTranscription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters the multi-step process of transcription initiation
no DOI — not checkedAdvances in enhanced biological phosphorus removal: from micro to macro scale
no DOI — not checkedMolecular basis for biosynthesis and accumulation of polyhydroxyalkanoic acids in bacteria
no DOI — not checkedMasters Dissertation
What this badge says. CiteStamped means the CHECKABLE references of this
work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
Embed this badge
Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.
<a href="https://citestamp.com/citestamped/10.1038/ismej.2015.155"><img src="https://citestamp.com/citestamped/10.1038/ismej.2015.155/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[](https://citestamp.com/citestamped/10.1038/ismej.2015.155)