Reference health

Biased biological functions of horizontally transferred genes in prokaryotic genomes

https://doi.org/10.1038/ng1381
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26/26 checkable references clean · checked 2026-07-23

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 26 checked references that resolve
resolves10.1016/S0966-842X(00)01703-0
Horizontal gene transfer and the origin of species: lessons from bacteria
resolves10.1038/35012500
Lateral gene transfer and the nature of bacterial innovation
resolves10.1006/tpbi.2002.1587
Gene Transfer in Bacteria: Speciation without Species?
resolves10.1038/421217a
Microbial phylogenomics: Branching out
resolves10.1073/pnas.1632870100
Horizontal gene transfer: A critical view
resolves10.1093/oxfordjournals.molbev.a004046
Prokaryotic Evolution in Light of Gene Transfer
resolves10.1073/pnas.95.11.6239
Genomic evidence for two functionally distinct gene classes
resolves10.1128/JB.181.17.5201-5209.1999
Distinct Types of rRNA Operons Exist in the Genome of the Actinomycete <i>Thermomonospora chromogena</i> and Evidence for Horizontal Transfer of an Entire rRNA Operon
resolves10.1146/annurev.micro.54.1.641
Pathogenicity Islands and the Evolution of Microbes
resolves10.1126/science.287.5459.1809
Complete Genome Sequence of <i>Neisseria meningitidis</i> Serogroup B Strain MC58
resolves10.1073/pnas.95.21.12381
Natural genetic exchange between <i>Haemophilus</i> and <i>Neisseria</i> : Intergeneric transfer of chromosomal genes between major human pathogens
resolves10.1128/JB.183.15.000-000.2001
Evolution of an Autotransporter: Domain Shuffling and Lateral Transfer from Pathogenic <i>Haemophilus</i> to <i>Neisseria</i>
resolves10.1016/0092-8674(92)90095-T
Bacterial plasmids and gene flux
resolves10.1007/PL00006158
Amelioration of Bacterial Genomes: Rates of Change and Exchange
resolves10.1093/nar/29.1.123
The Comprehensive Microbial Resource
resolves10.1128/.61.2.136-169.1997
Common themes in microbial pathogenicity revisited.
resolves10.1016/S1369-5274(99)00053-3
Bacterial pili: molecular mechanisms of pathogenesis
resolves10.1016/0097-8485(93)85004-V
GENMARK: Parallel gene recognition for both DNA strands
resolves10.1093/nar/23.17.3554
Detection of new genes in a bacterial genome using Markov models for three gene classes
resolves10.1007/s002390010214
Limitations of Compositional Approach to Identifying Horizontally Transferred Genes
resolves10.1016/S0168-9525(03)00055-6
Much ado about bacteria-to-vertebrate lateral gene transfer
resolves10.1046/j.1365-2958.1998.01008.x
Codon usages in different gene classes of the <i>Escherichia coli</i> genome
resolves10.1093/nar/15.3.1281
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
resolves10.1046/j.1365-2958.1997.3101672.x
Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution
resolves10.1073/pnas.85.8.2444
Improved tools for biological sequence comparison.
resolves10.1093/nar/22.22.4673
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
The 1 reference without a DOI — listed, not checked
no DOI — not checkedSaitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425 (1987).
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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