Reference health
Reverse engineering of regulatory networks in human B cells
40/40 checkable references clean · checked 2026-08-30
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
6 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 40 checked references that resolve
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Evidence for dynamically organized modularity in the yeast protein–protein interaction network
resolves10.1093/molbev/msh222
Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network
resolves10.1093/bioinformatics/btg333
Topology of gene expression networks as revealed by data mining and modeling
resolves10.1126/science.1081900
Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling
resolves10.1073/pnas.092576199
Reverse engineering gene networks using singular value decomposition and robust regression
resolves10.1126/science.292.5518.929
Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network
resolves10.1073/pnas.220392197
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
resolves10.1101/gr.947203
Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells
resolves10.1093/bioinformatics/18.suppl_1.S216
Evaluating functional network inference using simulations of complex
biological systems
resolves10.1186/gb-2003-4-4-r28
GoMiner: a resource for biological interpretation of genomic and proteomic data
resolves10.1186/gb-2003-4-10-r69
An integrated database of genes responsive to the Myc oncogenic transcription factor: identification of direct genomic targets
resolves10.1074/jbc.M210462200
A Large Scale Genetic Analysis of c-Myc-regulated Gene Expression Patterns
resolves10.1126/science.1087447
A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
resolves10.1016/S0378-1119(96)00661-0
ENP1, an essential gene encoding a nuclear protein that is highly conserved from yeast to humans
resolves10.1073/pnas.95.9.5027
A cytoplasmic protein, bystin, interacts with trophinin, tastin, and cytokeratin and may be involved in trophinin-mediated cell adhesion between trophoblast and endometrial epithelial cells
resolves10.1093/nar/gkg145
Enp1, a yeast protein associated with U3 and U14 snoRNAs, is required for pre-rRNA processing and 40S subunit synthesis
resolves10.1007/s00427-004-0447-8
Drosophila Bys is nuclear and shows dynamic tissue-specific expression during development
resolves10.1093/bioinformatics/18.suppl_2.S231
The mutual information: Detecting and evaluating dependencies between
variables
resolves10.1084/jem.194.11.1625
Gene Expression Profiling of B Cell Chronic Lymphocytic Leukemia Reveals a Homogeneous Phenotype Related to Memory B Cells
resolves10.1182/blood-2002-10-3090
Gene expression profile analysis of AIDS-related primary effusion lymphoma (PEL) suggests a plasmablastic derivation and identifies PEL-specific transcripts
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Gene Expression Profiling of Hairy Cell Leukemia Reveals a Phenotype Related to Memory B Cells with Altered Expression of Chemokine and Adhesion Receptors
resolves10.1172/JCI200316624
Identification of Hodgkin and Reed-Sternberg cell-specific genes by gene expression profiling
resolves10.1084/jem.20021395
BCL6 Controls the Expression of the B7-1/CD80 Costimulatory Receptor in Germinal Center B Cells
resolves10.1126/science.283.5402.676
Coordinated Regulation of Iron-Controlling Genes, H-Ferritin and
<i>IRP2</i>
, by c-MYC
resolves10.1002/j.1460-2075.1995.tb06978.x
B‐cell proliferation and induction of early G1‐regulating proteins by Epstein‐Barr virus mutants conditional for EBNA2.
resolves10.1101/gad.906601
Binding of c-Myc to chromatin mediates mitogen-induced acetylation of histone H4 and gene activation
The 6 references without a DOI — listed, not checked
no DOI — not checkedHartemink, A.J., Gifford, D.K., Jaakkola, T.S. & Young, R.A. Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. Pac. Symp. Biocomput. 2001, 422–433 (2001).
no DOI — not checkedButte, A.J. & Kohane, I.S. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac. Symp. Biocomput. 2000, 418–429 (2000).
no DOI — not checkedSmith, V.A., Jarvis, E.D. & Hartemink, A.J. Influence of network topology and data collection on network inference. Pac. Symp. Biocomput. 2003, 164–175 (2003).
no DOI — not checkedYu, J., Smith, A.V., Wang, P.P., Hartemink, A.J. & Jarvis, E.D. Using Bayesian network inference algorithms to recover molecular genetic regulatory networks. in 3rd International Conference on Systems Biology (Karolinska Institute, Stockholm, Sweden, 2002).
no DOI — not checkedD'Haeseleer, P., Wen, X., Fuhrman, S. & Somogyi, R. Linear modeling of mRNA expression levels during CNS development and injury. Pac. Symp. Biocomput. 1999, 41–52 (1999).
no DOI — not checkedCooper, G.F. & Herskovits, E. A Bayesian method for the induction of probabilistic networks from data. Mach. Learn. 9, 309–347 (1992).
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