Every reference with a DOI in the deposited reference list resolved to a known
work in Crossref or DataCite at the dated check, and none carried a retraction,
withdrawal, or removal notice.
The 80 checked references that resolve
resolves10.1038/nature06936Genome analysis of the platypus reveals unique signatures of evolution
resolves10.1038/nature03021In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes
resolves10.1071/RD09084Analysis of SINE and LINE repeat content of Y chromosomes in the platypus, Ornithorhynchus anatinus
resolves10.1073/pnas.0904649106Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas
resolves10.1038/nature13206Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
resolves10.1101/gr.7149808Defensins and the convergent evolution of platypus and reptile venom genes
resolves10.1093/molbev/msy243Influence of Recombination and GC-biased Gene Conversion on the Adaptive and Nonadaptive Substitution Rate in Mammals versus Birds
resolves10.1101/gr.7101908Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes
resolves10.1038/ng.3526The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
resolves10.1007/s00412-005-0034-4How did the platypus get its sex chromosome chain? A comparison of meiotic multiples and sex chromosomes in plants and animals
resolves10.1105/tpc.114.122655Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses
resolves10.1038/s41598-017-04560-5Differential cohesin loading marks paired and unpaired regions of platypus sex chromosomes at prophase I
resolves10.1038/nature11082Topological domains in mammalian genomes identified by analysis of chromatin interactions
resolves10.1186/s12862-019-1359-6Odontogenic ameloblast-associated (ODAM) is inactivated in toothless/enamelless placental mammals and toothed whales
resolves10.1093/molbev/msu144Frequent Expansions of the Bitter Taste Receptor Gene Repertoire during Evolution of Mammals in the Euarchontoglires Clade
resolves10.1093/gbe/evz200Comparative Genomic Analysis of the Pheromone Receptor Class 1 Family (V1R) Reveals Extreme Complexity in Mouse Lemurs (Genus, Microcebus) and a Chromosomal Hotspot across Mammals
resolves10.1016/0010-406X(66)90243-XRespiratory properties of blood and responses to diving of the platypus, Ornithorhynchus anatinus (shaw)
resolves10.1073/pnas.0508723103Haptoglobin, a hemoglobin-binding plasma protein, is present in bony fish and mammals but not in frog and chicken
resolves10.4049/jimmunol.1800508Haptoglobin Is a Divergent MASP Family Member That Neofunctionalized To Recycle Hemoglobin via CD163 in Mammals
resolves10.1016/j.cub.2016.10.012Bone Microvasculature Tracks Red Blood Cell Size Diminution in Triassic Mammal and Dinosaur Forerunners
resolves10.1182/blood-2005-03-1014CD163 is the macrophage scavenger receptor for native and chemically modified hemoglobins in the absence of haptoglobin
resolves10.1186/1471-2148-12-80The mammary gland-specific marsupial ELP and eutherian CTI share a common ancestral gene
resolves10.1071/RD09083Characterisation of monotreme caseins reveals lineage-specific expansion of an ancestral casein locus in mammals
resolves10.3168/jds.2013-6831Invited review: Caseins and the casein micelle: Their biological functions, structures, and behavior in foods
resolves10.1093/molbev/msr020The Evolution of Milk Casein Genes from Tooth Genes before the Origin of Mammals
resolves10.1101/gr.170720.113Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
resolves10.1186/gb-2007-8-11-r243The multiple sex chromosomes of platypus and echidna are not completely identical and several share homology with the avian Z
resolves10.1186/1471-2105-7-62Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
resolves10.1038/nbt.3122StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
resolves10.1038/ng.3802Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
resolves10.1101/gr.1933104Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
resolves10.1101/gr.1224503OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
resolves10.1093/molbev/mst100Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
resolves10.1038/ncomms14229Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features
resolves10.1080/10635150701472164Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
resolves10.1093/bioinformatics/bti042Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
resolves10.1007/s00412-008-0177-1Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution
resolves10.1126/science.1123191CTCF Mediates Interchromosomal Colocalization Between
<i>Igf2/H19</i>
and
<i>Wsb1/Nf1</i>
resolves10.1186/1471-2164-9-111Comparative genomic analysis and evolution of the T cell receptor loci in the opossum Monodelphis domestica
resolves10.1101/gr.082487.108Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes
The 11 references without a DOI — listed, not checked
no DOI — not checkedBoissinot, S. & Sookdeo, A. The evolution of LINE-1 in vertebrates. Genome Biol. Evol. 8, 3485–3507 (2016).
no DOI — not checkedDohm, J. C., Tsend-Ayush, E., Reinhardt, R., Grützner, F. & Himmelbauer, H. Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes. Genome Biol. 8, R175 (2007).
no DOI — not checkedGriffiths, M. The Biology of Monotremes (Academic, 1978).
no DOI — not checkedLiu, Z. et al. Dietary specialization drives multiple independent losses and gains in the bitter taste gene repertoire of Laurasiatherian mammals. Front. Zool. 13, 28 (2016).
no DOI — not checkedGriffiths, M. Echidnas (Pergamon, 1968).
no DOI — not checkedBao, W., Kojima, K. K. & Kohany, O. Repbase update, a database of repetitive elements in eukaryotic genomes. Mob. DNA 6, 11 (2015).
no DOI — not checkedHarris, R. S. Improved Pairwise Alignment of Genomic DNA. PhD thesis, Pennsylvania State Univ. (2007).
no DOI — not checkedBenton, M. J. et al. Constraints on the timescale of animal evolutionary history. Palaeontol. Electronica 18, 1–106 (2015).
no DOI — not checkedWang, Y. et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 40, e49 (2012).
no DOI — not checkedRamírez, F. et al. High-resolution TADs reveal DNA sequences underlying genome organization in flies. Nat. Commun. 9, 189 (2018).
no DOI — not checkedBailey, T. L. & Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28–36 (1994).
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