Reference health
Dynamic evolution and phylogenomic analysis of the chloroplast genome in Schisandraceae
60/60 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 60 checked references that resolve
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Chloroplast genomes: diversity, evolution, and applications in genetic engineering
resolves10.1093/gbe/evt063
Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales
resolves10.1073/pnas.1403363111
The dynamic history of plastid genomes in the Campanulaceae
<i>sensu lato</i>
is unique among angiosperms
resolves10.1371/journal.pone.0183652
The complete chloroplast genome sequences of three Adenophora species and comparative analysis with Campanuloid species (Campanulaceae)
resolves10.1186/s12864-017-4014-x
accD nuclear transfer of Platycodon grandiflorum and the plastid of early Campanulaceae
resolves10.1073/pnas.0806759105
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
resolves10.1093/molbev/mst257
Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates
resolves10.1016/j.ympev.2017.03.012
Species-level phylogeny, fruit evolution and diversification history of Geranium (Geraniaceae)
resolves10.1111/jse.12179
Plastid genome sequences of legumes reveal parallel inversions and multiple losses of<i>rps16</i>in papilionoids
resolves10.1093/gbe/evr095
Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny
resolves10.1111/pbi.12141
Highly rearranged and size‐variable chloroplast genomes in conifers <scp>II</scp> clade (cupressophytes): evolution towards shorter intergenic spacers
resolves10.1186/1471-2148-8-36
Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
resolves10.1371/journal.pone.0077965
Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
resolves10.1007/s00606-009-0210-8
Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA
resolves10.1007/s00606-008-0095-y
Homology in coding and non-coding DNA sequences: a parsimony perspective
resolves10.1111/pbi.12179
Evolutionary and biotechnology implications of plastid genome variation in the inverted‐repeat‐lacking clade of legumes
resolves10.1111/gcbb.12362
Plastid genome sequencing reveals biogeographical structure and extensive population genetic variation in wild populations of <i>Phalaris arundinacea</i> L. in north‐western Europe
resolves10.1016/j.flora.2009.02.004
Palynological data on Illiciaceae and Schisandraceae confirm phylogenetic relationships within these two basally-branching angiosperm families
resolves10.1371/journal.pone.0125574
Evaluation of Four Commonly Used DNA Barcoding Loci for Chinese Medicinal Plants of the Family Schisandraceae
resolves10.3732/ajb.1000077
Flower heating following anthesis and the evolution of gall midge pollination in Schisandraceae
resolves10.1111/j.1095-8339.2009.01002.x
A phylogenetic classification of the land plants to accompany APG III
resolves10.1016/j.ympev.2007.06.004
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)
resolves10.1007/s11427-017-9098-5
Complete chloroplast genome sequences of Schisandra chinensis: genome structure, comparative analysis, and phylogenetic relationship of basal angiosperms
resolves10.1089/cmb.2012.0021
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
resolves10.1007/s12686-016-0593-0
Development of chloroplast genomic resources for Akebia quinata (Lardizabalaceae)
resolves10.1093/bioinformatics/btm598
GenomeVx: simple web-based creation of editable circular chromosome maps
resolves10.1093/nar/29.22.4633
REPuter: the manifold applications of repeat analysis on a genomic scale
resolves10.1093/bioinformatics/btp187
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1093/molbev/msu300
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1093/sysbio/sys029
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
resolves10.3389/fpls.2017.00304
The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species
resolves10.12705/633.9
How many species of bracken (
<i>Pteridium</i>
) are there? Assessing the Chinese brackens using molecular evidence
resolves10.1186/s12870-016-0828-y
High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica
resolves10.1093/nar/gkw906
PMDBase: a database for studying microsatellite DNA and marker development in plants
resolves10.1111/j.1755-0998.2008.02319.x
Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species
resolves10.3390/ijms18112288
The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)
resolves10.3389/fpls.2017.01148
Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences
resolves10.1371/journal.pone.0035071
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
resolves10.1101/158857
The pomegranate (
<i>Punica granatum</i>
L.) genome provides insights into fruit quality and ovule developmental biology
resolves10.1186/1471-2148-14-23
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
resolves10.1111/j.1096-0031.2012.00418.x
Plastid genomes and deep relationships among the commelinid monocot angiosperms
resolves10.1093/molbev/msv082
A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus<i>Citrus</i>
resolves10.1093/molbev/mst200
Streptophyte Algae and the Origin of Land Plants Revisited Using Heterogeneous Models with Three New Algal Chloroplast Genomes
resolves10.1073/pnas.0709121104
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
resolves10.1093/sysbio/syu054
Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)
resolves10.1111/cla.12153
Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica
resolves10.1016/j.ympev.2015.11.021
Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia
The 2 references without a DOI — listed, not checked
no DOI — not checkedLima, M. S., Woods, L. C., Cartwright, M. W. & Smith, D. R. The (in)complete organelle genome: exploring the use and non-use of available technologies for characterizing mitochondrial and plastid chromosomes. Mol. Ecol. Resour. (2016).
no DOI — not checkedXu, C. et al. Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes. Front Plant Sci 8, 15 (2017).
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