Reference health
Extensive transcriptome changes during seasonal leaf senescence in field-grown black cottonwood (Populus trichocarpa Nisqually-1)
57/57 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 57 checked references that resolve
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High-Resolution Temporal Profiling of Transcripts during<i>Arabidopsis</i>Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation
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Programming of Plant Leaf Senescence with Temporal and Inter-Organellar Coordination of Transcriptome in Arabidopsis1
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Transcriptome analysis of senescence in the flag leaf of wheat (<i>Triticum aestivum</i> L.)
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Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq
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Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation‐induced senescence in Arabidopsis
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Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence‐promoting hormonal, pathological and environmental stress treatments
resolves10.1093/pcp/pcu160
Transcriptome Analysis of a Subtropical Deciduous Tree: Autumn Leaf Senescence Gene Expression Profile of Formosan Gum
resolves10.1101/gr.093302.109
Genome-wide mapping of alternative splicing in
<i>Arabidopsis thaliana</i>
resolves10.1126/science.1128691
The Genome of Black Cottonwood,
<i>Populus trichocarpa</i>
(Torr. & Gray)
resolves10.1038/nbt.3122
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
resolves10.1371/journal.pone.0157370
Validation of Reference Genes for Gene Expression by Quantitative Real-Time RT-PCR in Stem Segments Spanning Primary to Secondary Growth in Populus tomentosa
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PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
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Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus
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Deep-sequencing transcriptome analysis of low temperature perception in a desert tree, Populus euphratica
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Bioactive metabolites from the plant endophyte<i>Pestalotiopsis fici</i>
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Ecotype-dependent control of growth, dormancy and freezing tolerance under seasonal changes in Betula pendula Roth
resolves10.1104/pp.124.3.1305
Cloning and Characterization of a Receptor-Like Protein Kinase Gene Associated with Senescence
resolves10.1242/jcs.109116
Plant leaf senescence and death – regulation by multiple layers of control and implications for aging in general
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The Basic Helix-Loop-Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity
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Evolutionary and comparative analysis of MYB and bHLH plant transcription factors
resolves10.1016/j.cub.2008.10.058
Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness
resolves10.1038/nature10182
The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth
resolves10.1038/ncomms5636
Phytochrome-interacting transcription factors PIF4 and PIF5 induce leaf senescence in Arabidopsis
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Dark‐induced leaf senescence: new insights into a complex light‐dependent regulatory pathway
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The roles of ethylene and transcription factors in the regulation of onset of leaf senescence
resolves10.3390/ijms18020432
Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants
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A homolog of splicing factor <scp>SF</scp>1 is essential for development and is involved in the alternative splicing of pre‐m<scp>RNA</scp> in <i><scp>A</scp>rabidopsis thaliana</i>
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Arabidopsis MSI1 Is Required for Negative Regulation of the Response to Drought Stress
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The 5 references without a DOI — listed, not checked
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no DOI — not checkedArkin, A. P. (ORCID:0000000249992931) et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology 36 (2018).
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