Reference health
Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast
3 of 96 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
8 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1128/mBio
does not resolve to a known work10.1128/mSystems
does not resolve to a known work10.1093/femsec/fiz108/5528619
The 93 checked references that resolve
resolves10.1038/s41559-018-0676-2
Demosponge steroid biomarker 26-methylstigmastane provides evidence for Neoproterozoic animals
resolves10.1590/s0101-81752001000500012
Shallow-water Aplysina Nardo (Aplysinidae, Verongida, Demospongiae) from the São Sebastião Channel and its environs (Tropical southwestern Atlantic), with the description of a new species and a literature review of other brazilian records of the genus
resolves10.11646/zootaxa.1610.1.zootaxa.1609.1.1
Aplysina Nardo (Porifera, Verongida, Aplysinidae) from the Brazilian coast with description of eight new species
resolves10.1046/j.1463-6409.2000.00029.x
Phylogenetic relationships of the family Axinellidae (Porifera: Demospongiae) using morphological and molecular data
resolves10.1128/MMBR.00040-06
Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential
resolves10.1016/0022-0981(77)90038-7
Electron microscope study of the association between some sponges and bacteria
resolves10.1071/IS18027
Integrative taxonomy widens our knowledge of the diversity, distribution and biology of the genus Plakina (Homosclerophorida: Plakinidae)
resolves10.1017/S0025315420000296
Morphological description of six species of Suberitida (Porifera: Demospongiae) from the unexplored north-eastern coast of Brazil, with emphasis on two new species
resolves10.11646/zootaxa.4671.4.2
Two new Clathria (Axosuberites) Topsent, 1893 (Demospongiae: Poecilosclerida) from Northeastern Brazil
resolves10.1128/AEM.02101-08
Diversity of Bacteria in the Marine Sponge
<i>Aplysina fulva</i>
in Brazilian Coastal Waters
resolves10.1590/S1517-83822013000100048
Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva
resolves10.1007/s00227-008-1008-x
Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil
resolves10.1641/B570707
Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas
resolves10.1007/978-3-319-21012-4_51
Brazilian Marine Animal Forests: A New World to Discover in the Southwestern Atlantic
resolves10.1093/molbev/mss274
Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six Linear Chromosomes, Fragmented rRNAs, tRNA Editing, and a Novel Genetic Code
resolves10.1111/j.1471-8286.2005.01259.x
<i>CO1</i> phylogenies in diploblasts and the ‘Barcoding of Life’— are we sequencing a suboptimal partition?
resolves10.1139/gen-2018-0098
Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida
resolves10.1007/s13127-015-0247-1
A short LSU rRNA fragment as a standard marker for integrative taxonomy in calcareous sponges (Porifera: Calcarea)
resolves10.1017/S0025315409991202
<i>Aplysina</i> (Porifera: Demospongiae) species identification through SSCP-ITS patterns
resolves10.1007/s10750-011-0879-x
The complete mitochondrial genome of the verongid sponge Aplysina cauliformis: implications for DNA barcoding in demosponges
resolves10.1038/s41467-019-09537-8
The sponge microbiome within the greater coral reef microbial metacommunity
resolves10.1111/maec.12517
Assessing the bacterial communities of sponges inhabiting the remote western Indian Ocean island of Mayotte
resolves10.3389/fmicb.2014.00611
Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges
resolves10.1111/j.1462-2920.2011.02664.x
Sponge‐specific clusters revisited: a comprehensive phylogeny of sponge‐associated microorganisms
resolves10.1038/ncomms2392
Environmental conditions and community evenness determine the outcome of biological invasion
resolves10.1111/j.1462-2920.2011.02460.x
Marine sponges and their microbial symbionts: love and other relationships
resolves10.1002/jobm.201400466
Molecular diversity of fungal and bacterial communities in the marine sponge <i>Dragmacidon reticulatum</i>
resolves10.1038/s41598-017-02656-6
Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks
resolves10.3389/fmars.2019.00297
Prokaryotic Diversity and Community Patterns in Antarctic Continental Shelf Sponges
resolves10.1038/ismej.2012.111
‘Sponge-specific’ bacteria are widespread (but rare) in diverse marine environments
resolves10.1038/s41396-020-0706-3
Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses
resolves10.1038/s41396-020-0591-9
Characterization of a sponge microbiome using an integrative genome-centric approach
resolves10.1128/mSystems.00150-18
Marine Sponges as
<i>Chloroflexi</i>
Hot Spots: Genomic Insights and High-Resolution Visualization of an Abundant and Diverse Symbiotic Clade
resolves10.1007/s10126-012-9455-2
Genomic Mining for Novel FADH2-Dependent Halogenases in Marine Sponge-Associated Microbial Consortia
resolves10.1111/j.1758-2229.2009.00057.x
PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification
resolves10.1101/2020.06.22.165886
Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning
resolves10.1101/2020.04.27.061960
Expanding magnetic organelle biogenesis in the domain
<i>Bacteria</i>
resolves10.1186/s13568-018-0728-7
Direct IBE fermentation from mandarin orange wastes by combination of Clostridium cellulovorans and Clostridium beijerinckii
resolves10.3390/genes9030149
Novel Sequence Features of DNA Repair Genes/Proteins from Deinococcus Species Implicated in Protection from Oxidatively Generated Damage
resolves10.1101/2020.06.09.141952
Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting
resolves10.1111/1462-2920.13965
Phylogeny and genomics of SAUL, an enigmatic bacterial lineage frequently associated with marine sponges
resolves10.1128/msystems.00757-19
Roles of Organohalide-Respiring
<i>Dehalococcoidia</i>
in Carbon Cycling
resolves10.3390/md9112316
Brominated Compounds from Marine Sponges of the Genus Aplysina and a Compilation of Their 13C NMR Spectral Data
resolves10.1093/femsec/fix134
High-throughput sequencing revealed novel Dehalococcoidia in dechlorinating microbial enrichments from PCB-contaminated marine sediments
resolves10.1038/ismej.2013.143
Genome sequencing of a single cell of the widely distributed marine subsurface
<i>Dehalococcoidia,</i>
phylum
<i>Chloroflexi</i>
resolves10.1021/jo00248a040
Dragmacidin, a new cytotoxic bis(indole) alkaloid from a deep water marine sponge, Dragmacidon sp
resolves10.1021/acsomega.7b01786
On the Mechanism of Action of Dragmacidins I and J, Two New Representatives of a New Class of Protein Phosphatase 1 and 2A Inhibitors
resolves10.1099/ijsem.0.002593
Proposal of the suffix –ota to denote phyla. Addendum to ‘Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes’
resolves10.1038/s41579-018-0076-2
Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
resolves10.1111/1462-2920.13789
The metabolic potential of the single cell genomes obtained from the Challenger Deep,
<scp>M</scp>
ariana
<scp>T</scp>
rench within the candidate superphylum
<scp>P</scp>
arcubacteria (
<scp>OD</scp>
1)
resolves10.3389/fmicb.2015.00713
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
resolves10.3390/microorganisms8081132
Genomic Characterization and Environmental Distribution of a Thermophilic Anaerobe Dissulfurirhabdus thermomarina SH388T Involved in Disproportionation of Sulfur Compounds in Shallow Sea Hydrothermal Vents
resolves10.1128/mSphere.00637-19
Erratum for Royalty and Steen, “Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life”
resolves10.1016/S0923-2508(03)00035-4
The phylum Nanoarchaeota: Present knowledge and future perspectives of a unique form of life
resolves10.1186/s40168-018-0539-8
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
resolves10.3389/fmicb.2018.01971
Nano-Sized and Filterable Bacteria and Archaea: Biodiversity and Function
resolves10.1111/1758-2229.12740
Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum
<i>Nanoarchaeota</i>
resolves10.1016/j.ympev.2008.05.014
Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data
resolves10.1093/nar/25.17.3389
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
resolves10.1093/molbev/msy096
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
resolves10.1093/molbev/msp259
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
resolves10.1080/10635150390235520
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
resolves10.1109/GCE.2010.5676129
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1093/sysbio/sys029
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
resolves10.1111/1462-2920.13023
Every base matters: assessing small subunit
<scp>rRNA</scp>
primers for marine microbiomes with mock communities, time series and global field samples
resolves10.3354/ame01753
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
resolves10.1128/AEM.01541-09
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
resolves10.1093/nar/gks1219
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
resolves10.1093/nar/gkt1209
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
resolves10.1186/1471-2105-12-35
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
resolves10.1093/nar/gky379
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
resolves10.1186/s40793-020-00358-7
Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences
The 8 references without a DOI — listed, not checked
no DOI — not checkedvan Soest, R. W. et al. World Porifera database. World Porifera database (2019).
no DOI — not checkedThomas, T. et al. Diversity, structure and convergent evolution of the global sponge microbiome. Nat. Commun. 7, (2016).
no DOI — not checkedMoitinho-Silva, L. et al. The sponge microbiome project. Gigascience 6, (2017).
no DOI — not checkedMuricy, G. Porifera in Catálogo Taxonômico da Fauna do Brasil. PNUD. Assessed at http://fauna.jbrj.gov.br/fauna/faunadobrasil/6in2020–13–10 (2020).
no DOI — not checkedHajdu, E., Peixinho, S. & Fernandez, J. C. C. Esponjas marinhas da Bahia: Guia de campo e laboratório. Rio de Janeiro: Museu Nacional, Série Livros 45, 276 pp. (2011).
no DOI — not checkedOksanen, A. J. et al vegan: Community Ecology Package. R package version 2.5–6. https://CRAN.R-project.org/package=vegan (2019).
no DOI — not checkedHothorn, T., Bretz, F., Westfall, P. & Heiberger, R. M. Package ‘multcomp’ title simultaneous inference in general parametric models. Biometrical J. (2016).
no DOI — not checkedR Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/. (2020).
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