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Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor

https://doi.org/10.1038/srep28327
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Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 45 checked references that resolve
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Deciphering the evolution and metabolism of an anammox bacterium from a community genome
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The metagenome of the marine anammox bacterium ‘ <i>Candidatus</i> Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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The metagenomic basis of anammox metabolism in <i>Candidatus</i> ‘Brocadia fulgida’
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Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium “Candidatus Jettenia asiatica”
resolves10.1111/j.1462-2920.2008.01642.x
Diversity of ammonium‐oxidizing bacteria in a granular sludge anaerobic ammonium‐oxidizing (anammox) reactor
resolves10.1016/j.watres.2006.11.024
Quantification of anaerobic ammonium-oxidizing bacteria in enrichment cultures by real-time PCR
resolves10.1038/nmeth.1507
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
resolves10.1111/j.1462-2920.2008.01863.x
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
resolves10.1038/ismej.2010.18
Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics
resolves10.1038/ismej.2012.94
Sizing up metatranscriptomics
resolves10.1016/j.watres.2007.03.044
Startup of reactors for anoxic ammonium oxidation: Experiences from the first full-scale anammox reactor in Rotterdam
resolves10.1126/science.1185941
Sewage Treatment with Anammox
resolves10.1021/es201388t
Segregation of Biomass in Cyclic Anaerobic/Aerobic Granular Sludge Allows the Enrichment of Anaerobic Ammonium Oxidizing Bacteria at Low Temperatures
resolves10.1128/AEM.02337-09
Aggregate Size and Architecture Determine Microbial Activity Balance for One-Stage Partial Nitritation and Anammox
resolves10.1093/nar/gku1201
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
resolves10.1016/j.biortech.2010.11.039
Stability and microbial community structure of a partial nitrifying fixed-film bioreactor in long run
resolves10.1007/s00248-014-0546-7
Microbial Community Composition and Ultrastructure of Granules from a Full-Scale Anammox Reactor
resolves10.1007/s00253-012-4459-4
Factors influencing the density of aerobic granular sludge
resolves10.1111/j.1462-2920.2010.02400.x
Microbial metatranscriptomics in a permanent marine oxygen minimum zone
resolves10.1111/1574-6976.12014
How to make a living from anaerobic ammonium oxidation
resolves10.1128/AEM.02402-10
New Anaerobic, Ammonium-Oxidizing Community Enriched from Peat Soil
resolves10.1111/1462-2920.12674
Physiological characterization of anaerobic ammonium oxidizing bacterium ‘ <scp> <i>C</i> </scp> <i>andidatus</i>   <scp>J</scp> ettenia caeni’
resolves10.1016/j.febslet.2012.04.041
Anammox organism KSU‐1 expresses a NirK‐type copper‐containing nitrite reductase instead of a NirS‐type with cytochrome <i>cd</i><sub>1</sub>
resolves10.1016/j.jbiotec.2010.12.025
Microbial nitrate respiration – Genes, enzymes and environmental distribution
resolves10.1016/j.bbamem.2007.09.002
The prokaryotic complex iron–sulfur molybdoenzyme family
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A <i>Nitrospira</i> metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
resolves10.1016/j.watres.2011.10.034
Integration of anammox into the aerobic granular sludge process for main stream wastewater treatment at ambient temperatures
resolves10.3389/fmicb.2014.00031
Shotgun metagenomic data reveals significant abundance but low diversity of “Candidatus Scalindua” marine anammox bacteria in the Arabian Sea oxygen minimum zone
resolves10.1002/bit.21891
The membrane bioreactor: A novel tool to grow anammox bacteria as free cells
resolves10.1016/j.watres.2014.02.032
Full-scale partial nitritation/anammox experiences – An application survey
resolves10.1080/09593331003702746
Effect of granule size on autotrophic nitrogen removal in a granular sludge reactor
resolves10.1111/j.1751-7915.2011.00326.x
Successful hydraulic strategies to start up OLAND sequencing batch reactors at lab scale
resolves10.1073/pnas.0708897105
Microbial community gene expression in ocean surface waters
resolves10.1038/nbt.1883
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resolves10.1016/S0022-2836(05)80360-2
Basic local alignment search tool
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CDD: a Conserved Domain Database for the functional annotation of proteins
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FragGeneScan: predicting genes in short and error-prone reads
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KEGG: Kyoto Encyclopedia of Genes and Genomes
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
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Metatranscriptomic Analysis of Sulfur Oxidation Genes in the Endosymbiont of Solemya Velum
resolves10.1128/AEM.00864-10
Granule Formation Mechanisms within an Aerobic Wastewater System for Phosphorus Removal
The 2 references without a DOI — listed, not checked
no DOI — not checkedBrown, C. T., Howe, A., Zhang, Q., Pyrkosz, A. B. & Brom, T. H. A reference-free algorithm for computational normalization of shotgun sequencing data. arXiv preprint arXiv : 12034802 (2012).
no DOI — not checkedR., Core Team R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/ (2013).
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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