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Phylogenetic analysis of Zieria (Rutaceae) in Australia and New Caledonia based on nuclear ribosomal DNA shows species polyphyly, divergent paralogues and incongruence with chloroplast DNA
1 of 70 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
16 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1093/sysbio/44.4.570
The 69 checked references that resolve
resolves10.1016/j.ympev.2014.06.014
A molecular phylogeny of Acronychia, Euodia, Melicope and relatives (Rutaceae) reveals polyphyletic genera and key innovations for species richness
resolves10.1016/j.ympev.2003.08.021
Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes
resolves10.1016/1055-7903(92)90030-K
Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the compositae
resolves10.1006/mpev.1998.0545
Phylogenetic Utility of the External Transcribed Spacer (ETS) of 18S–26S rDNA: Congruence of ETS and ITS Trees ofCalycadenia(Compositae)
resolves10.2307/2399880
The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny
resolves10.1071/SB14033
A chloroplast phylogeny of Zieria (Rutaceae) in Australia and New Caledonia shows widespread incongruence with species-level taxonomy
resolves10.1111/j.1096-0031.2007.00175.x
Ribosomal DNA pseudogenes are widespread in the eucalypt group (Myrtaceae): implications for phylogenetic analysis
resolves10.1371/journal.pone.0072493
Major Clades of Australasian Rutoideae (Rutaceae) Based on rbcL and atpB Sequences
resolves10.1071/SB15008
Transfer of the New Caledonian genus Boronella to Boronia (Rutaceae) based on analyses of cpDNA and nrDNA
resolves10.1007/s00606-016-1344-0
Phylogeny, classification and biogeography of Halfordia (Rutaceae) in Australia and New Caledonia
resolves10.1007/PL00006306
Ribosomal External and Internal Transcribed Spacers: Combined Use in the Phylogenetic Analysis of Medicago (Leguminosae)
resolves10.1534/genetics.106.068874
An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets
resolves10.1093/genetics/145.3.821
The Evolution of Ribosomal DNA Divergent Paralogues and Phylogenetic Implications
resolves10.1016/0092-8674(81)90428-1
Orphons: Dispersed genetic elements derived from tandem repetitive genes of eucaryotes
resolves10.2307/2656600
Phylogenetic analysis of <i>Silphium</i> and subtribe Engelmanniinae (Asteraceae: Heliantheae) based on ITS and ETS sequence data
resolves10.1371/journal.pone.0019379
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
resolves10.1186/1471-2148-9-239
Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise
resolves10.1016/j.ympev.2007.01.013
Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants
resolves10.1007/s00606-016-1277-7
Incongruent patterns of nuclear and chloroplast variation in Correa (Rutaceae): introgression and biogeography in south-eastern Australia
resolves10.1016/j.ympev.2009.03.010
The polyploid series of Centaurea toletana: Glacial migrations and introgression revealed by nrDNA and cpDNA sequence analyzes
resolves10.1093/bioinformatics/16.7.573
Sister-Scanning: a Monte Carlo procedure for assessing signals
in recombinant sequences
resolves10.1071/SB08043
Phylogeny and classification of Eucalyptus subgenus Eudesmia (Myrtaceae) based on nuclear ribosomal DNA, chloroplast DNA and morphology
resolves10.1128/JVI.01100-06
Recombination Patterns in Aphthoviruses Mirror Those Found in Other Picornaviruses
resolves10.1071/SB02031
Evolution of the coastal neospecies
<i>Zieria</i>
<i>prostrata</i>
(Rutaceae) and its relationship to the
<i>Zieria</i>
<i>smithii</i>
species complex
resolves10.1071/SB13045
Phylogeny of the holly grevilleas (Proteaceae) based on nuclear ribosomal and chloroplast DNA
resolves10.1016/j.ympev.2013.02.003
Intricate patterns of phylogenetic relationships in the olive family as inferred from multi-locus plastid and nuclear DNA sequence analyses: A close-up on Chionanthus and Noronhia (Oleaceae)
resolves10.1023/A:1007462330699
A Conserved Motif in the 5.8S Ribosomal RNA (rRNA) Gene is a Useful Diagnostic Marker for Plant Internal Transcribed Spacer (ITS) Sequences
resolves10.1007/BF00985439
Molecular phylogeny and phylogeography ofLupinus (Leguminosae) inferred from nucleotide sequences of therbcL gene and ITS 1 + 2 regions of rDNA
resolves10.1600/036364408785679860
Exploring Evolutionary Dynamics of nrDNA in <i>Carex</i> Subgenus <i>Vignea</i> (Cyperaceae)
resolves10.1007/s00606-014-0980-5
Molecular phylogeny of Cotoneaster (Rosaceae) inferred from nuclear ITS and multiple chloroplast sequences
resolves10.2307/2419742
Length Variation in the Nuclear Ribosomal DNA Internal Transcribed Spacer Region of Non-Flowering Seed Plants
resolves10.1007/BF00013763
A conserved sequence in internal transcribed spacer 1 of plant nuclear rRNA genes
resolves10.1089/aid.2005.21.98
A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints
resolves10.1006/mpev.2001.0934
Why Nuclear Ribosomal DNA Spacers (ITS) Tell Different Stories in Quercus
resolves10.3897/phytokeys.44.8393
Phylogenetic relationships of Zieria (Rutaceae) inferred from chloroplast, nuclear, and morphological data
resolves10.1146/annurev.genet.39.073003.112240
Concerted and Birth-and-Death Evolution of Multigene Families
resolves10.1016/j.ympev.2007.04.017
Nuclear ribosomal pseudogenes resolve a corroborated monophyly of the eucalypt genus Corymbia despite misleading hypotheses at functional ITS paralogs
resolves10.1071/SB09028
Phylogeny, major clades and infrageneric classification of Corymbia (Myrtaceae), based on nuclear ribosomal DNA and morphology
resolves10.1007/s11033-009-9630-3
Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects
resolves10.1073/pnas.241370698
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
resolves10.1093/sysbio/syt052
Constructing Phylogenies in the Presence Of Intra-Individual Site Polymorphisms (2ISPs) with a Focus on the Nuclear Ribosomal Cistron
resolves10.1046/j.1365-294X.2002.01640.x
Internal transcribed spacer repeat‐specific primers and the analysis of hybridization in the <i>Glycine tomentella</i> (Leguminosae) polyploid complex
resolves10.1534/genetics.166.2.987
Multiple Origins and nrDNA Internal Transcribed Spacer Homeologue Evolution in the<i>Glycine tomentella</i>(Leguminosae) Allopolyploid Complex
resolves10.1080/10635150490423278
Recent Origin and Phylogenetic Utility of Divergent ITS Putative Pseudogenes: A Case Study from Naucleeae (Rubiaceae)
resolves10.1007/BF00984917
ITS sequences from nuclear rDNA suggest unexpected phylogenetic relationships between Euro-Mediterranean, East Asiatic and North American taxa ofQuercus (Fagaceae)
resolves10.1093/sysbio/41.1.4
Reconstruction of Organismal and Gene Phylogenies from Data on Multigene Families: Concerted Evolution, Homoplasy, and Confidence
resolves10.2307/2419746
Discordance Between ITS and Chloroplast Topologies in the Boykinia Group (Saxifragaceae)
resolves10.3732/ajb.1100335
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
resolves10.1016/j.ympev.2006.08.006
Reticulate evolution in the Acrolophus subgroup (Centaurea L., Compositae) from the western Mediterranean: Origin and diversification of section Willkommia Blanca
resolves10.1093/sysbio/43.2.250
Surveys of Gene Families Using Polymerase Chain Reaction: PCR Selection and PCR Drift
resolves10.3732/apps.1400042
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
resolves10.1046/j.1365-2699.2001.00605.x
Stepping stones to Hawaii: a trans‐equatorial dispersal pathway for<i>Metrosideros</i>(Myrtaceae) inferred from nrDNA (ITS+ETS)
resolves10.1016/j.ympev.2011.10.007
Analysis of DNA sequences of six chloroplast and nuclear genes suggests incongruence, introgression, and incomplete lineage sorting in the evolution of Lespedeza (Fabaceae)
resolves10.1371/journal.pone.0074828
Incongruence between Nuclear and Chloroplast DNA Phylogenies in Pedicularis Section Cyathophora (Orobanchaceae)
resolves10.1073/pnas.77.4.2158
Rapid duplication and loss of genes coding for the alpha chains of hemoglobin.
The 16 references without a DOI — listed, not checked
no DOI — not checkedArmstrong JA (1991) Studies on pollination and systematics in the Australian Rutaceae. PhD thesis, University of New South Wales, Sydney.
no DOI — not checked2026010522513867400_R5
no DOI — not checked2026010522513867400_R7
no DOI — not checked2026010522513867400_R19
no DOI — not checked2026010522513867400_R25
no DOI — not checked2026010522513867400_R26
no DOI — not checked2026010522513867400_R29
no DOI — not checked2026010522513867400_R37
no DOI — not checked2026010522513867400_R48
no DOI — not checkedAnalyzing the mosaic structure of genes.
no DOI — not checked2026010522513867400_R67
no DOI — not checkedRAD in the realm of next generation sequencing technologies.
no DOI — not checked2026010522513867400_R77
no DOI — not checked2026010522513867400_R78
no DOI — not checked2026010522513867400_R81
no DOI — not checked2026010522513867400_R82
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