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Big trees of small baskets: phylogeny of the Australian genus Spyridium (Rhamnaceae: Pomaderreae), focusing on biogeographic patterns and species circumscriptions

https://doi.org/10.1071/sb21034
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1 of 54 checkable references need attention · checked 2026-07-22

At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.

25 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

References needing attention

does not resolve to a known work10.1002/ajb2.1790.
The 53 checked references that resolve
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Phylogeny of the tribe Colletieae (Rhamnaceae) ? a sensitivity analysis of the plastid region trnL-trnF combined with morphology
resolves10.1016/S1055-7903(03)00208-2
Ribosomal ITS sequences and plant phylogenetic inference
resolves10.1071/SB16034
Phylogenetic analysis of Zieria (Rutaceae) in Australia and New Caledonia based on nuclear ribosomal DNA shows species polyphyly, divergent paralogues and incongruence with chloroplast DNA
resolves10.1093/genetics/121.3.613
Organelle gene diversity under migration, mutation, and drift: equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes.
resolves10.1093/oxfordjournals.molbev.a025621
Zea systematics: ribosomal ITS evidence
resolves10.3732/ajb.1200604
Limited hybridization across an edaphic disjunction between the gabbro‐endemic shrub <i>Ceanothus roderickii</i> (Rhamnaceae) and the soil‐generalist <i>Ceanothus cuneatus</i>
resolves10.1080/23802359.2018.1483776
The complete chloroplast genome sequence of <i>Spyridium parvifolium</i> var. <i>parvifolium</i> (family Rhamnaceae; tribe Pomaderreae)
resolves10.1071/BT97066
Is Geographic Range Correlated with Climatic Range in Australian <i>Spyridium</i> Taxa?
resolves10.1016/j.ympev.2007.02.030
A congruent molecular signature of vicariance across multiple plant lineages
resolves10.1071/BT00094
Chloroplast DNA phylogeography of <i>Eucalyptus globulus</i>
resolves10.1007/s00606-016-1277-7
Incongruent patterns of nuclear and chloroplast variation in Correa (Rutaceae): introgression and biogeography in south-eastern Australia
resolves10.1016/j.ympev.2017.04.003
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
resolves10.12705/651.4
Phylogenetic relationships within the cosmopolitan buckthorn family (Rhamnaceae) support the resurrection of <i>Sarcomphalus</i> and the description of <i>Pseudoziziphus</i> gen. nov.
resolves10.1111/jbi.13448
The influence of the Gondwanan breakup on the biogeographic history of the ziziphoids (Rhamnaceae)
resolves10.1071/BT9780493
The Late Pleistocene and Holocene Vegetational History of Hunter Island, North-Western Tasmania
resolves10.1111/jbi.12363
Historical biogeography of the predominantly Australian plant family Goodeniaceae
resolves10.1023/A:1007462330699
A Conserved Motif in the 5.8S Ribosomal RNA (rRNA) Gene is a Useful Diagnostic Marker for Plant Internal Transcribed Spacer (ITS) Sequences
resolves10.1111/j.1755-0998.2011.03065.x
JML: testing hybridization from species trees
resolves10.1086/600082
A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
resolves10.1038/nmeth.4285
ModelFinder: fast model selection for accurate phylogenetic estimates
resolves10.1093/nar/gkf436
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1093/bioinformatics/bts199
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
resolves10.5962/p.292241
Revision of the Spyridium bifidum – S. halmaturinum complex (Rhamnaceae: Pomaderreae) from South Australia and Victoria
resolves10.2307/25065419
Phylogenetic analysis and generic limits of the tribe Pomaderreae (Rhamnaceae) using internal transcribed spacer DNA sequences
resolves10.1080/03721426.2008.10887089
Nomenclatural Notes, Typificationsand Name Changes in <i>Trymalium</i> (Rhamnaceae: Pomaderreae)
resolves10.1016/S0006-3207(97)00144-4
Locating likely glacial forest refugia in Tasmania using palynological and ecological information to test alternative climatic models
resolves10.1093/sysbio/sys005
Searching for Ancestral Areas and Artifactual Centers of Origin in Biogeography: with Comment on East–West Patterns Across Southern Australia
resolves10.1111/j.1365-2699.2010.02391.x
Genetic evidence for the origins of range disjunctions in the Australian dry sclerophyll plant Hardenbergia violacea
resolves10.21425/F55419694
Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing
resolves10.1071/SB20013
Phylogeographic patterns of the Australian grass trees (Xanthorrhoea Asphodelaceae) shown using targeted amplicon sequencing
resolves10.1007/s00606-012-0646-0
Interspecific and intergeneric hybridization in South American Rhamnaceae-Colletieae
resolves10.1016/j.ympev.2007.12.019
Phylogeographic patterns in the Australasian genus Chionohebe (Veronica s.l., Plantaginaceae) based on AFLP and chloroplast DNA sequences
resolves10.3732/ajb.1200327
The impact of multiple biogeographic barriers and hybridization on species‐level differentiation
resolves10.1007/s00606-004-0218-z
Molecular phylogeny of Phebalium (Rutaceae: Boronieae) and related genera based on the nrDNA regions ITS 1+2
resolves10.1016/j.ympev.2018.05.031
Australasian orchid biogeography at continental scale: Molecular phylogenetic insights from the Sun Orchids (Thelymitra, Orchidaceae)
resolves10.1007/s00606-019-01589-z
Phylogeography, classification and conservation of pink zieria (Zieria veronicea; Rutaceae): influence of changes in climate, geology and sea level in south-eastern Australia
resolves10.3389/fevo.2020.616741
Reticulate Evolution, Ancient Chloroplast Haplotypes, and Rapid Radiation of the Australian Plant Genus Adenanthos (Proteaceae)
resolves10.1016/j.ympev.2021.107085
Historical biogeography of Pomaderris (Rhamnaceae): Continental vicariance in Australia and repeated independent dispersals to New Zealand
resolves10.1093/molbev/msu300
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1086/284689
Chloroplast DNA Evolution and Biosystematic Uses of Chloroplast DNA Variation
resolves10.1080/10635150701883881
Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
resolves10.1098/rstb.2004.1537
Historical biogeography of two cosmopolitan families of flowering plants: Annonaceae and Rhamnaceae
resolves10.1101/gr.128124.111
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
resolves10.1093/bioinformatics/btg180
MrBayes 3: Bayesian phylogenetic inference under mixed models
resolves10.3389/fgene.2016.00035
Extinction in Phylogenetics and Biogeography: From Timetrees to Patterns of Biotic Assemblage
resolves10.1371/journal.pone.0195034
Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae)
resolves10.1007/s10265-010-0379-5
Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue
resolves10.1186/1471-2105-11-7
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
resolves10.1111/j.0014-3820.2003.tb00585.x
A MODEL FOR CHLOROPLAST CAPTURE
resolves10.1093/aob/mcx086
Habitat type and dispersal mode underlie the capacity for plant migration across an intermittent seaway
resolves10.1093/biolinnean/bly127
Pleistocene divergence of two disjunct conifers in the eastern Australian temperate zone
resolves10.1071/SB96019
Geographic Variation in <i>Eucalyptus diversifolia</i> (Myrtaceae) and the Recognition of New Subspecies <i>E. diversifolia</i> subsp. <i>hesperia</i> and <i>E. diversifolia</i> subsp. <i>megacarpa</i>
The 25 references without a DOI — listed, not checked
no DOI — not checked2025102207472720200_R3
no DOI — not checked2025102207472720200_R4
no DOI — not checkedStandardising informal names in Australian publications.
no DOI — not checked2025102207472720200_R7
no DOI — not checked2025102207472720200_R11
no DOI — not checked2025102207472720200_R12
no DOI — not checked2025102207472720200_R16
no DOI — not checkedGenomic plant DNA preparation from fresh tissue-CTAB method.
no DOI — not checked2025102207472720200_R20
no DOI — not checkedMorphological and molecular analysis of putative hybrid speciation in Ceanothus (Rhamnaceae).
no DOI — not checked2025102207472720200_R26
no DOI — not checkedRe-instatement of the name Spyridium waterhousei from Kangaroo Island, South Australia, with a short history of the tribe Pomaderreae (Rhamnaceae).
no DOI — not checkedThe importance of the ‘h’ – parahomonymy in Trymalium (Rhamnaceae: Pomaderreae).
no DOI — not checkedLarge indels obscure phylogeny in analysis of chloroplast DNA (trnL–F) sequence data: Pomaderreae (Rhamnaceae) revisited.
no DOI — not checked2025102207472720200_R41
no DOI — not checked2025102207472720200_R46
no DOI — not checked2025102207472720200_R50
no DOI — not checkedDisjunct plant distributions on the south-western Nullarbor Plain, Western Australia.
no DOI — not checked2025102207472720200_R61
no DOI — not checked2025102207472720200_R62
no DOI — not checkedPhylogenetic consequences of cytoplasmic gene flow in plants.
no DOI — not checkedSpyridium burragorang (Rhamnaceae), a new species from New South Wales, with new combinations for Spyridium buxifolium and Spyridium scortechinii.
no DOI — not checked2025102207472720200_R74
no DOI — not checked2025102207472720200_R75
no DOI — not checked2025102207472720200_R76
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