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Components of the DNA Methylation System of Chromatin Control Are RNA-binding Proteins

https://doi.org/10.1074/jbc.m409070200
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1 of 70 checkable references need attention · checked 2026-07-25

At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.

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References needing attention

marked retracted — notice via Crossref, record curated by Retraction Watch10.1016/S1097-2765(03)00276-4
RETRACTED: A Mutant Form of MeCP2 Protein Associated with Human Rett Syndrome Cannot Be Displaced from Methylated DNA by Notch in Xenopus Embryos
The 69 checked references that resolve
resolves10.1093/hmg/9.16.2395
The DNA methyltransferases of mammals
resolves10.1101/gad.947102
DNA methylation patterns and epigenetic memory
resolves10.1016/S1084-9521(02)00137-4
DNA methylation in animal development
resolves10.1016/S0168-9525(03)00080-5
The methyl-CpG binding domain and the evolving role of DNA methylation in animals
resolves10.1016/0092-8674(92)90611-F
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
resolves10.1038/366362a0
Role for DNA methylation in genomic imprinting
resolves10.1016/S0092-8674(01)00280-X
Genomic Imprinting Disrupted by a Maternal Effect Mutation in the Dnmt1 Gene
resolves10.1038/2413
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
resolves10.1101/gad.9.19.2325
Loss of methylation activates Xist in somatic but not in embryonic cells.
resolves10.1101/gad.10.16.1991
DNA hypomethylation can activate Xist expression and silence X-linked genes.
resolves10.1016/S0092-8674(00)81656-6
DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development
resolves10.1038/nature02633
Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting
resolves10.1242/dev.129.8.1983
Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice
resolves10.1126/science.1065848
Dnmt3L and the Establishment of Maternal Genomic Imprints
resolves10.1038/ng1089
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
resolves10.1016/S0960-9822(00)00448-6
Active demethylation of the paternal genome in the mouse zygote
resolves10.1038/35000656
Demethylation of the zygotic paternal genome
resolves10.1126/science.1063443
Epigenetic Reprogramming in Mammalian Development
resolves10.1016/0092-8674(92)90610-O
Purification, sequence, and cellular localization of a novel chromosomal protein that binds to Methylated DNA
resolves10.1128/MCB.18.11.6538
Identification and Characterization of a Family of Mammalian Methyl-CpG Binding Proteins
resolves10.1093/nar/21.21.4886
Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2
resolves10.1038/561
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
resolves10.1038/30764
Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
resolves10.1038/12659
MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex
resolves10.1038/12664
Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
resolves10.1101/gad.13.15.1924
Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation
resolves10.1016/S0092-8674(02)00654-2
Cooperation between Complexes that Regulate Chromatin Structure and Transcription
resolves10.1038/5047
Synergy of demethylation and histone deacetylase inhibition in the re-expression of genes silenced in cancer
resolves10.1016/S0092-8674(03)00234-4
MTA3, a Mi-2/NuRD Complex Subunit, Regulates an Invasive Growth Pathway in Breast Cancer
resolves10.1128/MCB.24.8.3387-3395.2004
Mbd1 Is Recruited to both Methylated and Nonmethylated CpGs via Distinct DNA Binding Domains
resolves10.1074/jbc.M210256200
The Methyl-CpG-binding Protein MeCP2 Links DNA Methylation to Histone Methylation
resolves10.1074/jbc.M302283200
Methyl-CpG Binding Domain 1 (MBD1) Interacts with the Suv39h1-HP1 Heterochromatic Complex for DNA Methylation-based Transcriptional Repression
resolves10.1128/MCB.23.8.2834-2843.2003
MCAF Mediates MBD1-Dependent Transcriptional Repression
resolves10.1074/jbc.M305308200
Chromatin Compaction by Human MeCP2
resolves10.1073/pnas.1131928100
Mice lacking methyl-CpG binding protein 1 have deficits in adult neurogenesis and hippocampal function
resolves10.1101/gad.194101
Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development
resolves10.1016/S1097-2765(02)00564-6
Gene Silencing Quantitatively Controls the Function of a Developmental trans-Activator
resolves10.1038/ng1155
Deficiency of Mbd2 suppresses intestinal tumorigenesis
resolves10.1002/jcp.1064
Role of <i>MED1</i> (<i>MBD4</i>) Gene in DNA repair and human cancer
resolves10.1073/pnas.96.7.3969
MED1, a novel human methyl-CpG-binding endonuclease, interacts with DNA mismatch repair protein MLH1
resolves10.1038/45843
The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
resolves10.1126/science.1073354
Enhanced CpG Mutability and Tumorigenesis in MBD4-Deficient Mice
resolves10.1038/13810
Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
resolves10.1093/hmg/ddg286
DNA methylation and Rett syndrome
resolves10.1038/85906
Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in mice
resolves10.1038/85899
A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome
resolves10.1073/pnas.242566899
Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain
resolves10.1126/science.1086446
Derepression of BDNF Transcription Involves Calcium-Dependent Phosphorylation of MeCP2
resolves10.1126/science.1090842
DNA Methylation-Related Chromatin Remodeling in Activity-Dependent <i>Bdnf</i> Gene Regulation
resolves10.1126/science.1091762
MeCP2 Repression Goes Nonglobal
resolves10.1128/MCB.16.1.414
DNA Methylation Specifies Chromosomal Localization of MeCP2
resolves10.1093/nar/gkg249
The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
resolves10.1016/j.molcel.2003.08.008
N-CoR Mediates DNA Methylation-Dependent Repression through a Methyl CpG Binding Protein Kaiso
resolves10.1093/emboj/18.7.1982
Nup153 is an M9‐containing mobile nucleoporin with a novel Ran‐binding domain
resolves10.1016/S0959-437X(97)80148-7
RNA-binding proteins as regulators of gene expression
resolves10.1016/S0955-0674(00)00211-8
Spliceosomal UsnRNP biogenesis, structure and function
resolves10.1021/bi0001271
Effects of Rett Syndrome Mutations of the Methyl-CpG Binding Domain of the Transcriptional Repressor MeCP2 on Selectivity for Association with Methylated DNA
resolves10.1074/jbc.M007224200
DNA Recognition by the Methyl-CpG Binding Domain of MeCP2
resolves10.1016/S0092-8674(01)00480-9
A Novel Peptide Recognition Mode Revealed by the X-Ray Structure of a Core U2AF35/U2AF65 Heterodimer
resolves10.1126/science.8036511
Conserved Structures and Diversity of Functions of RNA-Binding Proteins
resolves10.1146/annurev.biophys.27.1.407
RNA RECOGNITION BY RNP PROTEINS DURING RNA PROCESSING
resolves10.1016/S0959-440X(02)00323-8
RNA–protein interactions
resolves10.1016/S1097-2765(03)00178-3
RNA Recognition via the SAM Domain of Smaug
resolves10.1093/emboj/19.21.5587
The structure of the mRNA export factor TAP reveals a cis arrangement of a non‐canonical RNP domain and an LRR domain
resolves10.1038/nsb926
A novel mode of RBD-protein recognition in the Y14–Mago complex
resolves10.1016/S0960-9822(03)00328-2
Structure of the Y14-Magoh Core of the Exon Junction Complex
resolves10.1093/nar/gkf512
Having it both ways: transcription factors that bind DNA and RNA
resolves10.1038/nature02088
Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition
resolves10.1016/S1097-2765(00)80434-7
Homeodomain Position 54 Specifies Transcriptional versus Translational Control by Bicoid
The 1 reference without a DOI — listed, not checked
no DOI — not checked10.1074/jbc.M409070200_bib22
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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