Reference health
Comprehensive assessment of nine target prediction web services: which should we choose for target fishing?
56/56 checkable references clean · checked 2026-07-24
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 56 checked references that resolve
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Predicting the Reliability of Drug-target Interaction Predictions with Maximum Coverage of Target Space
resolves10.1016/j.cell.2017.08.051
Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer
resolves10.1080/17460441.2017.1280024
Computational polypharmacology: a new paradigm for drug discovery
resolves10.1016/j.drudis.2015.12.007
In silico methods to address polypharmacology: current status, applications and future perspectives
resolves10.2174/0929867311320130005
Predicting Targeted Polypharmacology for Drug Repositioning and Multi- Target Drug Discovery
resolves10.1080/17460441.2020.1767063
An up-to-date overview of computational polypharmacology in modern drug discovery
resolves10.1021/acs.jmedchem.8b00760
Polypharmacology by Design: A Medicinal Chemist’s Perspective on Multitargeting Compounds
resolves10.1038/nature11159
Large-scale prediction and testing of drug activity on side-effect targets
resolves10.1016/j.ddtec.2006.12.008
In silico target fishing: Predicting biological targets from chemical structure
resolves10.1021/acs.jcim.7b00225
IFPTarget: A Customized Virtual Target Identification Method Based on Protein–Ligand Interaction Fingerprinting Analyses
resolves10.1093/nar/gkl114
TarFisDock: a web server for identifying drug targets with docking approach
resolves10.1016/j.ejmech.2021.113772
ProfKin: A comprehensive web server for structure-based kinase profiling
resolves10.1016/j.jprot.2011.05.011
From in silico target prediction to multi-target drug design: Current databases, methods and applications
resolves10.1021/ci034160g
Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling
resolves10.1021/jm020491t
Development and Validation of <i>k</i>-Nearest-Neighbor QSPR Models of Metabolic Stability of Drug Candidates
resolves10.1016/S0097-8485(01)00094-8
Drug design by machine learning: support vector machines for pharmaceutical data analysis
resolves10.1017/CBO9780511801389
An Introduction to Support Vector Machines and Other Kernel-based Learning Methods
resolves10.1021/ci060003g
Prediction of Biological Targets for Compounds Using Multiple-Category Bayesian Models Trained on Chemogenomics Databases
resolves10.1121/1.400114
Classification of audiograms by sequential testing using a dynamic Bayesian procedure
resolves10.3389/fenvs.2016.00003
QSAR Modeling of Tox21 Challenge Stress Response and Nuclear Receptor Signaling Toxicity Assays
resolves10.1093/nar/gku293
SwissTargetPrediction: a web server for target prediction of bioactive small molecules
resolves10.1021/acs.jcim.8b00524
Polypharmacology Browser PPB2: Target Prediction Combining Nearest Neighbors with Machine Learning
resolves10.1007/s10822-016-9915-2
TargetNet: a web service for predicting potential drug–target interaction profiling via multi-target SAR models
resolves10.1093/nar/gkl999
BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
resolves10.1039/C9NP00064J
Natural allosteric modulators and their biological targets: molecular signatures and mechanisms
resolves10.1093/nar/gkz382
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
resolves10.1093/bib/bbz157
Machine learning approaches and databases for prediction of drug–target interaction: a survey paper
resolves10.1021/ci8002914
Inductive Transfer of Knowledge: Application of Multi-Task Learning and Feature Net Approaches to Model Tissue-Air Partition Coefficients
resolves10.1371/journal.pone.0037608
A Systematic Prediction of Multiple Drug-Target Interactions from Chemical, Genomic, and Pharmacological Data
resolves10.1016/j.ejmech.2020.112644
A combinatorial target screening strategy for deorphaning macromolecular targets of natural product
The 7 references without a DOI — listed, not checked
no DOI — not checkedA review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions
no DOI — not checkedIn Silicotarget fishing: addressing a “big data” problem by ligand-based similarity rankings with data fusion
no DOI — not checkedConcepts and applications of molecular similarity
no DOI — not checkedMachine learning methods in chemoinformatics, Wiley interdisciplinary reviews: computational molecular
no DOI — not checkedSys Chem Biol
no DOI — not checkedThe polypharmacology browser: a web-based multi-fingerprint target prediction tool using ChEMBL bioactivity data
no DOI — not checkedReliable estimation of prediction errors for QSAR models under model uncertainty using double cross-validation
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carried a retraction notice at that time. It says nothing about the quality, findings,
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