Reference health
Gearing up to handle the mosaic nature of life in the quest for orthologs
28/28 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
The 28 checked references that resolve
resolves10.1093/nar/gku1158
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
resolves10.1093/gbe/evv121
Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream
resolves10.1093/nar/gkv310
TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction: Figure 1.
resolves10.1093/bib/bbr042
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
resolves10.1186/1471-2164-11-81
FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology
resolves10.1093/bioinformatics/btw006
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets
resolves10.1073/pnas.1423041112
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
resolves10.1093/nar/gkv1248
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
resolves10.1093/nar/gku1220
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
resolves10.1093/nar/gkv1194
PANTHER version 10: expanded protein families and functions, and analysis tools
resolves10.1371/journal.pcbi.1002073
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals
resolves10.1186/1471-2164-15-S6-S16
A meta-approach for improving the prediction and the functional annotation of ortholog groups
resolves10.1093/bib/bbr025
Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
resolves10.1016/S0168-9525(02)02793-2
Orthology, paralogy and proposed classification for paralog subtypes
resolves10.3389/fpls.2015.01194
CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool
resolves10.1093/nar/gkt1209
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
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checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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