Reference health
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
84/84 checkable references clean · checked 2026-08-03
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
13 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 84 checked references that resolve
resolves10.1002/tax.621014
Report of the Nomenclature Committee for Fungi 19: Official repositories for fungal names
resolves10.5598/imafungus.2013.04.02.17
A without-prejudice list of generic names of fungi for protection under the International Code of Nomenclature for algae, fungi, and plants
resolves10.1016/j.tree.2011.11.001
Evolutionary informatics: unifying knowledge about the diversity of life
resolves10.1371/journal.pone.0000059
Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective
resolves10.1016/j.ympev.2008.03.024
Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies
resolves10.1016/j.ympev.2009.04.016
Comments on the paper by Pleijel et al. (2008): Vouching for GenBank
resolves10.1371/journal.pone.0029715
Darwin Core: An Evolving Community-Developed Biodiversity Data Standard
resolves10.1111/j.1365-294X.1993.tb00005.x
ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts
resolves10.1111/j.1469-8137.2005.01376.x
UNITE: a database providing web‐based methods for the molecular identification of ectomycorrhizal fungi
resolves10.1016/j.ympev.2012.01.026
ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies
resolves10.1128/AEM.06826-11
Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes
resolves10.1371/journal.pone.0043117
PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution
resolves10.1111/j.1469-8137.2010.03334.x
The online database Maarj<i>AM</i> reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
resolves10.1093/nar/gkq1166
Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing
resolves10.1016/j.fgb.2005.06.007
An oligonucleotide barcode for species identification in Trichoderma and Hypocrea
resolves10.1098/rsbl.2003.0025
Barcoding animal life: cytochrome
<i>c</i>
oxidase subunit 1 divergences among closely related species
resolves10.1111/j.1471-8286.2007.01678.x
<scp>bold</scp>
: The Barcode of Life Data System (http://www.barcodinglife.org)
resolves10.1073/pnas.1117018109
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for
<i>Fungi</i>
resolves10.1073/pnas.1207143109
Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for
<i>Fungi</i>
resolves10.1007/s00253-012-4165-2
Aspergillus and Penicillium identification using DNA sequences: barcode or MLST?
resolves10.1371/journal.pone.0025081
Comparing COI and ITS as DNA Barcode Markers for Mushrooms and Allies (Agaricomycotina)
resolves10.1371/journal.pone.0062419
Filling Gaps in Biodiversity Knowledge for Macrofungi: Contributions and Assessment of an Herbarium Collection DNA Barcode Sequencing Project
resolves10.3767/003158511X571841
<i>Zymoseptoria</i> gen. nov.: a new genus to accommodate <i>Septoria-</i>like species occurring on graminicolous hosts
resolves10.3852/10-333
A new lineage in Pucciniomycotina: class Tritirachiomycetes, order Tritirachiales, family Tritirachiaceae
resolves10.1017/S0024282910000344
Successful DNA sequencing of a 75 year-old herbarium specimen of <i>Aspicilia aschabadensis</i> (J. Steiner) Mereschk.
resolves10.1007/s11557-009-0612-6
Comparative taxonomy of desert truffles of the Australian outback and the African Kalahari
resolves10.1017/S0953756204000310
Controversy over Hygrophorus cossus settled using ITS sequence data from 200 year-old type material
resolves10.3897/zookeys.346.5753
GenSeq: An updated nomenclature and ranking for genetic sequences from type and non-type sources
resolves10.3732/ajb.91.10.1446
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
resolves10.1111/2041-210X.12073
Improved software detection and extraction of ITS1 and
<scp>ITS</scp>
2 from ribosomal
<scp>ITS</scp>
sequences of fungi and other eukaryotes for analysis of environmental sequencing data
resolves10.1111/j.1432-1033.1985.tb08977.x
Nomenclature for incompletely specified bases in nucleic acid sequences
resolves10.2174/1874136301105010011
Centrality of Objects in a Multidimensional Space and its Effects on Distance-Based Biological Classifications
resolves10.1093/molbev/msn188
Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought
resolves10.1007/s11557-006-0039-2
Phylogeny and taxonomy of Cladosporium-like hyphomycetes, including Davidiella gen. nov., the teleomorph of Cladosporium s. str.
resolves10.1099/ijs.0.054197-0
Use of gene sequence analyses and genome comparisons for yeast systematics
resolves10.1371/journal.pone.0027507
Data Partitions, Bayesian Analysis and Phylogeny of the Zygomycetous Fungal Family Mortierellaceae, Inferred from Nuclear Ribosomal DNA Sequences
resolves10.5248/111.75
Taxonomic position of <I>Mucor hiemalis</I> f. <I>luteus</I>
resolves10.5598/imafungus.2013.04.01.01
Taiwanascus samuelsii sp. nov., an addition to Niessliaceae from the Western Ghats, Kerala, India
resolves10.1371/journal.pone.0090899
Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal
resolves10.1371/journal.ppat.1003996
Oral Mycobiome Analysis of HIV-Infected Patients: Identification of Pichia as an Antagonist of Opportunistic Fungi
resolves10.5598/imafungus.2014.05.01.04
Possible house-keeping and other draft proposals to clarify or enhance the naming of fungi within the International Code of Nomenclature for algae, fungi, and plants (ICN)
resolves10.1128/AEM.01135-07
Ecological Constraints Limit the Fitness of Fungal Hybrids in the
<i>Heterobasidion annosum</i>
Species Complex
resolves10.1002/ece3.586
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer<scp>rDNA</scp>region in fungi
resolves10.1046/j.1365-294X.2003.01965.x
Interspecific hybridization in plant‐associated fungi and oomycetes: a review
resolves10.3852/10-312
The diversity of <i>Terfezia</i> desert truffles: new species and a highly variable species complex with intrasporocarpic nrDNA ITS heterogeneity
resolves10.1101/gr.5457707
Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
resolves10.1111/j.1469-8137.2009.02802.x
Using heterozygosity to estimate a percentage DNA sequence similarity for environmental species’ delimitation across basidiomycete fungi
resolves10.1111/j.1365-294X.2011.05110.x
Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
resolves10.1016/S1567-1356(03)00012-6
Phylogenetic relationships among yeasts of the ? complex? determined from multigene sequence analyses
resolves10.1038/nature02053
Genome-scale approaches to resolving incongruence in molecular phylogenies
resolves10.2174/1874136301105010030
Identification of Fungal DNA Barcode Targets and PCR Primers Based on Pfam Protein Families and Taxonomic Hierarchy
resolves10.1371/journal.pone.0019039
Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data
resolves10.11646/zootaxa.2632.1.4
Genetypes: a concept to help integrate molecular phylogenetics and taxonomy
resolves10.1128/AEM.01541-09
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
resolves10.1371/journal.pone.0049334
CREST – Classification Resources for Environmental Sequence Tags
resolves10.1186/1471-2105-13-211
NetiNeti: discovery of scientific names from text using machine learning methods
resolves10.1016/S0953-7562(09)80810-1
The fungal dimension of biodiversity: magnitude, significance, and conservation
resolves10.3897/mycokeys.4.3606
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
resolves10.1007/s10482-013-9928-y
Cryptococcus lacticolor sp. nov. and Rhodotorula oligophaga sp. nov., novel yeasts isolated from the nasal smear microbiota of Queensland koalas kept in Japanese zoological parks
The 13 references without a DOI — listed, not checked
no DOI — not checked1_40537966
no DOI — not checked3_47814363
no DOI — not checked6_48116300
no DOI — not checked11_32815982
no DOI — not checked42_48116313
no DOI — not checked48_24877882
no DOI — not checked65_48116325
no DOI — not checked66_48116326
no DOI — not checked68_48116327
no DOI — not checked89_48116329
no DOI — not checked95_48116331
no DOI — not checked97_48116333
no DOI — not checked98_48116334
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