Reference health
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects
75/75 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
9 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 75 checked references that resolve
resolves10.1186/1471-2164-15-736
Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
resolves10.1016/j.ydbio.2009.11.025
miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only
resolves10.1016/j.ydbio.2008.12.036
Drosophila mir-9a regulates wing development via fine-tuning expression of the LIM only factor, dLMO
resolves10.1073/pnas.1105499108
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
resolves10.1093/oxfordjournals.molbev.a026334
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
resolves10.1111/j.1365-2583.2010.01039.x
Next‐generation small RNA sequencing for microRNAs profiling in the honey bee
<i>Apis mellifera</i>
resolves10.1111/j.1525-142X.2008.00301.x
Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
resolves10.1186/1471-2164-13-116
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
resolves10.1016/j.ymeth.2013.06.027
Kraken: A set of tools for quality control and analysis of high-throughput sequence data
resolves10.1101/gr.093781.109
Repertoire and evolution of miRNA genes in four divergent nematode species
resolves10.1093/nar/gkr688
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
resolves10.1146/annurev-genet-120213-092023
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
resolves10.1093/molbev/mst155
Substantial Loss of Conserved and Gain of Novel MicroRNA Families in Flatworms
resolves10.1093/nar/gkx1038
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1073/pnas.1907847116
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
resolves10.1111/syen.12401
MicroRNA evolution provides new evidence for a close relationship of Diplura to Insecta
resolves10.1073/pnas.1418522112
MiR-2 family regulates insect metamorphosis by controlling the juvenile hormone signaling pathway
resolves10.1016/j.ibmb.2012.10.009
Insect MicroRNAs: Biogenesis, expression profiling and biological functions
resolves10.1242/dev.02168
MAP kinase subcellular localization controls both pattern and proliferation in the developing
<i>Drosophila</i>
wing
resolves10.1128/MCB.00302-09
<i>Drosophila</i> FoxO Regulates Organism Size and Stress Resistance through an Adenylate Cyclase
resolves10.14806/ej.17.1.200
Cutadapt removes adapter sequences from high-throughput sequencing reads
resolves10.1111/j.1469-185X.2007.00018.x
Why are there so many insect species? Perspectives from fossils and phylogenies
resolves10.1073/pnas.1117559109
Control of target gene specificity during metamorphosis by the steroid response gene
<i>E93</i>
resolves10.1093/molbev/msu300
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1101/gr.193367.115
MicroRNA evolution, expression, and function during short germband development in
<i>Tribolium castaneum</i>
resolves10.1002/bies.200900033
MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion
resolves10.1093/molbev/msv004
A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths
resolves10.1093/bioinformatics/19.2.301
r8s: inferring absolute rates of molecular evolution and
divergence times in the absence of a molecular clock
resolves10.1002/jez.b.21118
The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
resolves10.1073/pnas.0802067105
Insulin signaling and FOXO regulate the overwintering diapause of the mosquito
<i>Culex pipiens</i>
resolves10.1073/pnas.1502751112
Identification of FOXO targets that generate diverse features of the diapause phenotype in the mosquito
<i>Culex pipiens</i>
resolves10.1093/bioinformatics/btv351
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
resolves10.1038/nrm3854
Regulation of microRNA function in somatic stem cell proliferation and differentiation
resolves10.1186/gb-2003-5-1-p1
resolves10.1073/pnas.1401478111
Transcription factor E93 specifies adult metamorphosis in hemimetabolous and holometabolous insects
resolves10.1101/gr.084640.108
Evolution under canalization and the dual roles of microRNAs—A hypothesis
resolves10.1089/omi.2011.0118
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
The 9 references without a DOI — listed, not checked
no DOI — not checkedInsect metamorphosis: from natural history to regulation of development and evolution.
no DOI — not checkedInsect morphology and phylogeny
no DOI — not checkedEvolution of the insects
no DOI — not checkedThe expansion of animal microRNA families revisited
no DOI — not checkedThe phylogenetic utility and functional constraint of microRNA flanking sequences
no DOI — not checkedLewin’s genes XII
no DOI — not checkedPhylogeny of endopterygote insects, the most successful lineage of living organisms
no DOI — not checkedDollo parsimony and the reconstruction of genome evolution
no DOI — not checkedA congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
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