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The Mitochondrial Genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) Supports Intramolecular Recombination as the Primary Mechanism of Gene Rearrangement in Octocoral Mitochondrial Genomes
1 of 67 checkable references need attention · checked 2026-07-26
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
6 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1093/nar/25.5.0955
The 66 checked references that resolve
resolves10.1007/s00239-005-0226-9
Mitochondrial Genome Dynamics in Plants and Animals: Convergent Gene Fusions of a MutS Homologue
resolves10.1073/pnas.93.11.5619
Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase.
resolves10.1093/genetics/148.3.1091
The Mitochondrial Genome of the Sea Anemone Metridium senile (Cnidaria): Introns, a Paucity of tRNA Genes, and a Near-Standard Genetic Code
resolves10.1007/PL00006429
Sequence Analysis of the Mitochondrial Genome of Sarcophyton glaucum: Conserved Gene Order Among Octocorals
resolves10.1007/s002270000457
Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences
resolves10.1186/1471-2148-11-228
A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function
resolves10.1007/978-94-011-4309-7_13
The Duplication/Random Loss Model for Gene Rearrangement Exemplified by Mitochondrial Genomes of Deuterostome Animals
resolves10.1016/S0959-437X(98)80035-X
Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
resolves10.1073/pnas.89.18.8750
Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure.
resolves10.1007/s00239-008-9116-2
The Mitochondrial Genome of a Deep-Sea Bamboo Coral (Cnidaria, Anthozoa, Octocorallia, Isididae): Genome Structure and Putative Origins of Replication Are Not Conserved Among Octocorals
resolves10.1016/j.tig.2009.07.003
Group I-intron trans-splicing and mRNA editing in the mitochondria of placozoan animals
resolves10.1007/s10126-008-9093-x
Unique Mitogenomic Features in the Scleractinian Family Pocilloporidae (Scleractinia: Astrocoeniina)
resolves10.1007/s10126-008-9129-2
Comparative Analyses of Coding and Noncoding DNA Regions Indicate that Acropora (Anthozoa: Scleractina) Possesses a Similar Evolutionary Tempo of Nuclear vs. Mitochondrial Genomes as in Plants
resolves10.11646/zootaxa.1668.1.11
The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus*
resolves10.1186/1741-7007-9-64
Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis
resolves10.1073/pnas.0602076103
Mitochondrial genome of
<i>Trichoplax adhaerens</i>
supports Placozoa as the basal lower metazoan phylum
resolves10.1093/molbev/msp072
Characterization of 67 Mitochondrial tRNA Gene Rearrangements in the Hymenoptera Suggests That Mitochondrial tRNA Gene Position Is Selectively Neutral
resolves10.1007/s00239-002-2420-3
Frequent Mitochondrial Gene Rearrangements at the Hymenopteran nad3-nad5 Junction
resolves10.1038/hdy.2008.62
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
resolves10.1111/j.1574-6976.1997.tb00349.x
Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangements
resolves10.1186/1471-2148-6-24
No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
resolves10.1016/j.ympev.2009.12.007
Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species
resolves10.1007/s00239-008-9069-5
Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding
resolves10.1093/hmg/9.19.2821
Human mtDNA sublimons resemble rearranged mitochondrial genomes found in pathological states
resolves10.1016/j.gene.2007.12.002
The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny
resolves10.1093/molbev/msi108
Mitochondrial Genomes of Two Demosponges Provide Insights into An Early Stage of Animal Evolution
resolves10.1016/0300-9084(96)84764-X
A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria
resolves10.1016/j.ympev.2006.06.010
A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences
resolves10.1093/icb/icq056
Molecular Phylogenetic Insights into the Evolution of Octocorallia: A Review
resolves10.1007/s10126-002-0102-1
Variation in Coding (NADH Dehydrogenase Subunits 2, 3, and 6) and Noncoding Intergenic Spacer Regions of the Mitochondrial Genome in Octocorallia (Cnidaria: Anthozoa)
resolves10.1016/j.gene.2011.07.003
The complete mitochondrial genome of Calicogorgia granulosa (Anthozoa: Octocorallia): Potential gene novelty in unidentified ORFs formed by repeat expansion and segmental duplication
resolves10.1016/j.ympev.2011.10.008
Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record
resolves10.1007/PL00006321
Mitochondrial DNA of the coral sarcophyton glaucum contains a gene for a homologue of bacterial muts: A possible case of gene transfer from the nucleus to the mitochondrion
resolves10.1186/1471-2164-11-440
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs
resolves10.1093/sysbio/sys029
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
resolves10.1186/1471-2148-6-71
Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria
resolves10.1093/gbe/evq030
Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
resolves10.1016/j.gene.2006.06.021
Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): A linear DNA molecule encoding a putative DNA-dependent DNA polymerase
resolves10.1046/j.1365-294X.2002.01652.x
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
resolves10.1016/0378-1119(89)90022-X
Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution
resolves10.1093/gbe/evr127
First Complete Mitochondrial Genome Sequence from a Box Jellyfish Reveals a Highly Fragmented Linear Architecture and Insights into Telomere Evolution
resolves10.1186/1471-2105-8-21
GraphDNA: a Java program for graphical display of DNA composition analyses
resolves10.1016/j.gene.2011.01.019
Complete mitochondrial genomes of two Japanese precious corals, Paracorallium japonicum and Corallium konojoi (Cnidaria, Octocorallia, Coralliidae): Notable differences in gene arrangement
resolves10.1016/j.margen.2009.10.002
Exploring the utility of an indel-rich, mitochondrial intergenic region as a molecular barcode for bamboo corals (Octocorallia: Isididae)
resolves10.1007/s00239-001-0075-0
The Mitochondrial Genome of Acropora tenuis (Cnidaria; Scleractinia) Contains a Large Group I Intron and a Candidate Control Region
resolves10.1186/1471-2164-9-350
A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata
resolves10.1093/molbev/msl167
Mitochondrial Genome of the Homoscleromorph Oscarella carmela (Porifera, Demospongiae) Reveals Unexpected Complexity in the Common Ancestor of Sponges and Other Animals
resolves10.1371/journal.pone.0002723
Seventeen New Complete mtDNA Sequences Reveal Extensive Mitochondrial Genome Evolution within the Demospongiae
resolves10.1371/journal.pone.0026645
Rapid Evolution of the Mitochondrial Genome in Chalcidoid Wasps (Hymenoptera: Chalcidoidea) Driven by Parasitic Lifestyles
resolves10.1007/s00239-005-0246-5
The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes
The 6 references without a DOI — listed, not checked
no DOI — not checkedMitochondrial genomes of Anthozoa (Cnidaria)
no DOI — not checkedIntramitochondrial recombination—is it why some mitochondrial genes sleep around? Trends Ecol Evol
no DOI — not checkedTRDB—the tandem repeats database
no DOI — not checkedGlass sponges and bilaterian animals share derived mitochondrial genomic features: a common ancestry or parallel evolution? Mol Biol Evol
no DOI — not checkedSite-specific recombination: integration, excision, resolution, and inversion of defined DNA segments
no DOI — not checkedThe complete mitochondrial genome of Dendronephthya gigantea (Anthozoa: Octocorallia: Nephtheidae)
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