Reference health

A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome

https://doi.org/10.1093/gbe/evx280
CiteStamped reference-health badge
69/69 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 69 checked references that resolve
resolves10.1016/j.gde.2003.10.009
Hox gene evolution in nematodes: novelty conserved
resolves10.1242/dev.1994.Supplement.209
The evolving role of Hox genes in arthropods
resolves10.1016/S0022-2836(05)80360-2
Basic local alignment search tool
resolves10.2174/1875036201307010001
Comparison of Sequencing Utility Programs
resolves10.1214/aos/1013699998
The control of the false discovery rate in multiple testing under dependency
resolves10.1038/nbt.3238
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
resolves10.1007/BF00016809
Diapause, quiescence, hatching requirements: what we can learn from large freshwater branchiopods (Crustacea: Branchiopoda: Anostraca, Notostraca, Conchostraca)
resolves10.1093/jxb/ers322
Plant sex chromosome evolution
resolves10.1038/nmeth.2474
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
resolves10.1016/0003-2697(87)90021-2
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
resolves10.1126/science.1197761
The Ecoresponsive Genome of <i>Daphnia pulex</i>
resolves10.1186/1471-2105-6-45
wFleaBase: the Daphnia genome database
resolves10.1534/g3.115.023655
Major Improvements to the <i>Heliconius melpomene</i> Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution
resolves10.1002/bies.10319
Hox genes and the crustacean body plan
resolves10.1093/nar/gku1099
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
resolves10.1111/j.1432-0436.1989.tb00747.x
Anterior boundaries of Hox gene expression in mesoderm-derived structures correlate with the linear gene order along the chromosome
resolves10.1242/dev.001065
The rise and fall of Hox gene clusters
resolves10.1186/1471-2105-10-48
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
resolves10.1126/science.1162986
Real-Time DNA Sequencing from Single Polymerase Molecules
resolves10.1371/journal.pgen.1004522
Intrapopulation Genome Size Variation in D. melanogaster Reflects Life History Variation and Plasticity
resolves10.1186/1471-2164-15-86
Finding the missing honey bee genes: lessons learned from a genome upgrade
resolves10.1006/tpbi.1995.1025
Statistical Properties of Segregating Sites
resolves10.1073/pnas.1017351108
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
resolves10.1093/nar/gkq313
A new bioinformatics analysis tools framework at EMBL-EBI
resolves10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome
resolves10.1038/nature11041
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
resolves10.1139/gen-2013-0004
Larger <i>Daphnia</i> at lower temperature: a role for cell size and genome configuration?
resolves10.1101/gr.170720.113
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
resolves10.1186/gb-2002-3-12-research0084
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
resolves10.7554/eLife.20062
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion
resolves10.1186/gb-2010-11-11-r116
Quake: quality-aware detection and correction of sequencing errors
resolves10.1101/gr.229202
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
resolves10.1093/molbev/msw054
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
resolves10.1186/gb-2004-5-2-r12
Versatile and open software for comparing large genomes
resolves10.1038/ng.3430
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
resolves10.1016/j.humimm.2014.12.016
Impact of three Illumina library construction methods on GC bias and HLA genotype calling
resolves10.1016/j.bdq.2015.02.001
Assessing the performance of the Oxford Nanopore Technologies MinION
resolves10.1093/genetics/163.2.811
The Evolution of Sex Dimorphism in Recombination
resolves10.1186/s13059-014-0550-8
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
resolves10.1126/science.1089370
The Origins of Genome Complexity
resolves10.1093/bioinformatics/btr011
A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers
resolves10.1093/nar/gkt376
Analysis Tool Web Services from the EMBL-EBI
resolves10.1126/science.287.5461.2196
A Whole-Genome Assembly of <i>Drosophila</i>
resolves10.1139/G06-155
Amphipod genome sizes: first estimates for Arctic species reveal genomic giants
resolves10.1038/nature08742
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
resolves10.1016/0305-0491(74)90269-7
Nuclear DNA amounts in crustacea
resolves10.1038/nature06784
The genome of the model beetle and pest Tribolium castaneum
resolves10.1038/ng.2007.60
Dynamic evolution of the innate immune system in Drosophila
resolves10.1086/285475
The Genetic Mechanism of Sex Determination in the Conchostracan Shrimp Eulimnadia texana
resolves10.1016/j.mrfmmm.2004.07.022
High-throughput SNP genotyping on universal bead arrays
resolves10.1111/j.1525-142X.2006.00114.x
Transcriptional readthrough of Hox genes <i>Ubx</i> and <i>Antp</i> and their divergent post‐transcriptional control during crustacean evolution
resolves10.1038/msb.2011.75
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
resolves10.1093/bioinformatics/btv351
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
resolves10.1073/pnas.1008617108
Draft genome of the globally widespread and invasive Argentine ant ( <i>Linepithema humile</i> )
resolves10.1016/j.cub.2015.11.059
The Compact Body Plan of Tardigrades Evolved by the Loss of a Large Body Region
resolves10.1093/bioinformatics/btg1080
Gene prediction with a hidden Markov model and a new intron submodel
resolves10.1016/j.palwor.2015.02.003
Dating the origin of the major lineages of Branchiopoda
resolves10.1093/bioinformatics/btp120
TopHat: discovering splice junctions with RNA-Seq
resolves10.1038/nrg3117
Repetitive DNA and next-generation sequencing: computational challenges and solutions
resolves10.1038/nrg2484
RNA-Seq: a revolutionary tool for transcriptomics
resolves10.1126/science.1139862
Evolutionary Dynamics of Immune-Related Genes and Pathways in Disease-Vector Mosquitoes
resolves10.1111/j.1420-9101.2004.00712.x
Levels of inbreeding depression over seven generations of selfing in the androdioecious clam shrimp, <i>Eulimnadia texana</i>
resolves10.1111/j.1420-9101.2010.01963.x
Sex chromosome evolution in the clam shrimp, <i>Eulimnadia texana</i>
resolves10.1111/j.1420-9101.2009.01813.x
Evolutionary transitions among dioecy, androdioecy and hermaphroditism in limnadiid clam shrimp (Branchiopoda: Spinicaudata)
resolves10.1023/A:1003106702451
Notes on the life history of the clam shrimp, Eulimnadia texana
resolves10.1139/z99-103
Rates of inbreeding in the androdioecious clam shrimp <i>Eulimnadia texana</i>
resolves10.1038/srep31900
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
resolves10.1534/g3.116.038638
A New Reference Genome Assembly for the Microcrustacean <i>Daphnia pulex</i>
resolves10.1126/science.1225385
Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in <i>Drosophila</i>
The 3 references without a DOI — listed, not checked
no DOI — not checkedkey 20180328134322_evx280-B5
no DOI — not checkedHow many genes does it take to make a human? Wanna bet?
no DOI — not checkedContiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

Embed this badge

Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.

<a href="https://citestamp.com/citestamped/10.1093/gbe/evx280"><img src="https://citestamp.com/citestamped/10.1093/gbe/evx280/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[![CiteStamped reference-health badge](https://citestamp.com/citestamped/10.1093/gbe/evx280/badge.svg)](https://citestamp.com/citestamped/10.1093/gbe/evx280)