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MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

32/32 checkable references clean · checked 2026-07-25

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

The 32 checked references that resolve

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Sequence and organization of the human mitochondrial genome

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The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria

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Mammalian mitogenomic relationships and the root of the eutherian tree

resolves10.1093/nar/gks1195

GenBank

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MITOS: Improved de novo metazoan mitochondrial genome annotation

resolves10.1093/nar/27.8.1767

Animal mitochondrial genomes

resolves10.1186/1471-2105-10-421

BLAST+: architecture and applications

resolves10.1093/nar/gkr1144

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa

resolves10.1093/nar/8.22.5213

A mammalian mitochondrial serine transfer RNA lacking the “dihydrouridine” loop and stem

resolves10.1007/BF02515387

Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome

resolves10.1093/bioinformatics/btl021

AMiGA: the arthropodan mitochondrial genomes accessible database

resolves10.1038/hdy.2008.62

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

resolves10.1016/S1055-7903(02)00331-7

Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the “ancient fish”

resolves10.1093/molbev/msg206

Evolution of the Deep-Sea Gulper Eel Mitochondrial Genomes: Large-Scale Gene Rearrangements Originated Within the Eels

resolves10.1093/nar/gkr1131

Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements

resolves10.1093/bioinformatics/btm573

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences

resolves10.1093/nar/25.5.955

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

resolves10.1007/s00239-004-2621-z

Gene Rearrangements and Evolution of tRNA Pseudogenes in the Mitochondrial Genome of the Parrotfish (Teleostei: Perciformes: Scaridae)

resolves10.1007/PL00011798

Organization of the Mitochondrial Genome of a Deep-Sea Fish, Gonostoma gracile (Teleostei: Stomiiformes): First Example of Transfer RNA Gene Rearrangements in Bony Fishes

resolves10.1006/mpev.2000.0839

Use of Mitogenomic Information in Teleostean Molecular Phylogenetics: A Tree-Based Exploration under the Maximum-Parsimony Optimality Criterion

resolves10.1016/S1055-7903(02)00332-9

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

resolves10.1093/bioinformatics/btp157

Infernal 1.0: inference of RNA alignments

resolves10.1093/nar/gkn819

GOBASE: an organelle genome database

resolves10.1016/0092-8674(80)90350-5

The tRNA genes punctuate the reading of genetic information in human mitochondrial DNA

resolves10.1007/BF02100203

Evolution of the mitochondrial genetic code I. Origin of AGR serine and stop codons in metazoan mitochondria

resolves10.1093/molbev/msr014

Evolution of Modern Birds Revealed by Mitogenomics: Timing the Radiation and Origin of Major Orders

resolves10.1093/nar/gkr1079

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

resolves10.1016/j.tree.2003.09.020

Mitogenomics and the sister of Salmonidae

resolves10.1111/j.1471-8286.2007.01678.x

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resolves10.1186/1471-2164-12-35

Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination

resolves10.1093/bioinformatics/bti326

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies

resolves10.1093/bioinformatics/bth352

Automatic annotation of organellar genomes with DOGMA

What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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