Reference health
InsectBase 2.0: a comprehensive gene resource for insects
49/49 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
6 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 49 checked references that resolve
resolves10.1641/0006-3568(2006)56[311:TEVOES]2.0.CO;2
The Economic Value of Ecological Services Provided by Insects
resolves10.1146/annurev.ento.54.110807.090459
Conflict, Convergent Evolution, and the Relative Importance of Immature and Adult Characters in Endopterygote Phylogenetics
resolves10.1126/science.1181369
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
resolves10.1093/nar/gku983
The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes
resolves10.1093/nar/gku1117
VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases
resolves10.1093/nar/gkv1208
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine
resolves10.1534/g3.115.023655
Major Improvements to the
<i>Heliconius melpomene</i>
Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution
resolves10.7554/eLife.36495
Firefly genomes illuminate parallel origins of bioluminescence in beetles
resolves10.1186/1471-2164-14-464
KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostella
resolves10.1038/ncomms3957
The locust genome provides insight into swarm formation and long-distance flight
resolves10.1093/nar/gkp807
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
resolves10.1093/database/baz016
Increased interactivity and improvements to the
<i>GigaScience</i>
database, GigaDB
resolves10.1093/database/bas048
ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species
resolves10.1126/science.aal3327
De novo assembly of the
<i>Aedes aegypti</i>
genome using Hi-C yields chromosome-length scaffolds
resolves10.1073/pnas.1921046117
RepeatModeler2 for automated genomic discovery of transposable element families
resolves10.1093/nargab/lqaa108
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
resolves10.1093/nargab/lqaa026
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
resolves10.1093/nar/gkn105
A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence
resolves10.1093/nar/gks708
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
resolves10.1093/bioinformatics/btn013
Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding
resolves10.1101/gr.275193.120
Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N
resolves10.1186/s13059-019-1910-1
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
resolves10.1016/j.infsof.2005.09.005
Engineering a software tool for gene structure prediction in higher organisms
resolves10.1186/gb-2008-9-1-r7
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
resolves10.1093/nar/gkr688
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
resolves10.1186/s13059-016-0924-1
JBrowse: a dynamic web platform for genome visualization and analysis
resolves10.1093/nar/gkr1293
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
resolves10.1016/j.cell.2014.08.018
RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
resolves10.1186/s13059-018-1519-9
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
resolves10.1038/s41586-019-1923-7
Improved protein structure prediction using potentials from deep learning
The 6 references without a DOI — listed, not checked
no DOI — not checkedHi-C: a method to study the three-dimensional architecture of genomes
no DOI — not checkedSilkDB 3.0: visualizing and exploring multiple levels of data for silkworm
no DOI — not checkedDatabase resources of the National Genomics Data Center in 2020
no DOI — not checkedFEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
no DOI — not checkedBLAT–the BLAST-like alignment tool
no DOI — not checkedInteractive exploration of genomic conservation
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work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
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checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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