Reference health
MGnify: the microbiome sequence data analysis resource in 2023
27/27 checkable references clean · checked 2026-07-14
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a publisher retraction, withdrawal, or removal notice.
3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 27 checked references that resolve
resolves10.1186/s40793-022-00433-1
Ecosystem-specific microbiota and microbiome databases in the era of big data
resolves10.1038/nature02340
Community structure and metabolism through reconstruction of microbial genomes from the environment
resolves10.1038/nbt.2939
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
resolves10.1038/s41564-017-0012-7
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
resolves10.1038/s41586-019-1058-x
New insights from uncultivated genomes of the global human gut microbiome
resolves10.1038/s41587-020-0603-3
A unified catalog of 204,938 reference genomes from the human gut microbiome
resolves10.1093/nar/gky1013
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes
resolves10.1093/nar/gkx319
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
resolves10.1093/gigascience/giac077
A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications
resolves10.1002/anie.202203061
Discovery and Genetic Code Expansion of a Polyethylene Terephthalate (PET) Hydrolase from the Human Saliva Metagenome for the Degradation and Bio‐Functionalization of PET
resolves10.1007/s00792-022-01259-y
Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases
resolves10.1186/1471-2105-11-119
Prodigal: prokaryotic gene recognition and translation initiation site identification
resolves10.1371/journal.pone.0061217
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
resolves10.1186/s13059-021-02306-1
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
The 3 references without a DOI — listed, not checked
no DOI — not checkedMGnify: the microbiome analysis resource in 2020
no DOI — not checkedImplementing FAIR Digital Objects in the EOSC-Life Workflow Collaboratory
no DOI — not checkedJupyter Notebooks – a publishing format for reproducible computational workflows
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work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a publisher retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-14 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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