Reference health
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
1 of 41 checkable references need attention · checked 2026-07-25
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.4056/sigs.5559608
The 40 checked references that resolve
resolves10.1186/s40793-015-0077-y
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
resolves10.1186/1471-2105-8-209
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
resolves10.1093/nar/gkx1038
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
resolves10.1186/1471-2105-11-119
Prodigal: prokaryotic gene recognition and translation initiation site identification
resolves10.1038/nprot.2007.131
Locating proteins in the cell using TargetP, SignalP and related tools
resolves10.1093/bioinformatics/17.7.646
Evaluation of methods for the prediction of membrane spanning
regions
resolves10.1093/nar/gku1223
Expanded microbial genome coverage and improved protein family annotation in the COG database
resolves10.1093/nar/gkv1164
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
resolves10.1371/journal.pone.0054859
Improving Microbial Genome Annotations in an Integrated Database Context
resolves10.1371/journal.pone.0007979
Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
resolves10.1093/nar/gkw1103
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
resolves10.1186/s40793-016-0138-x
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
resolves10.1093/nar/gkw1030
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
resolves10.1186/s12864-016-2629-y
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
resolves10.1214/aoms/1177730491
On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other
resolves10.1111/j.2517-6161.1995.tb02031.x
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
resolves10.21775/cimb.024.017
Guidelines to Statistical Analysis of Microbial Composition Data Inferred from Metagenomic Sequencing
resolves10.1186/s40168-016-0154-5
Recovering complete and draft population genomes from metagenome datasets
resolves10.1038/s41564-017-0012-7
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
resolves10.1038/sdata.2017.203
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
resolves10.1038/nmeth.4458
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
resolves10.1038/nbt.3893
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
resolves10.7717/peerj.1165
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
resolves10.1101/gr.186072.114
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
resolves10.1145/2618243.2618244
Maintaining a microbial genome & metagenome data analysis system in an academic setting
resolves10.1093/nar/gkx319
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
The 5 references without a DOI — listed, not checked
no DOI — not checkedMetabolic Reconstruction of Microbial Genomes and Microbial Community Metagenomes
no DOI — not checkedMathematics of a lady tasting tea
no DOI — not checkedThe generalization of Student's problem when several different population variances are involved
no DOI — not checkedOn the probable error of a coefficient of correlation deduced from a small sample
no DOI — not checkedDiscovering Statistics using SPSS
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work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-25 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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