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The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
95/95 checkable references clean · checked 2026-10-06
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
11 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
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Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life
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Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased
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Gene flow analysis method, the D-statistic, is robust in a wide parameter space
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The 11 references without a DOI — listed, not checked
no DOI — not checkedAccounting for uncertainty in gene tree estimation: summary-coalescent species tree inference in a challenging radiation of Australian lizards
no DOI — not checkedIrrational exuberance for resolved species trees
no DOI — not checkedIntroduction to bivariate and multivariate analysis
no DOI — not checkedDisentangling incomplete lineage sorting and introgression to refine species-tree estimates for Lake Tanganyika cichlid fishes
no DOI — not checkedDividing the indivisible: using simple symmetry to partition variance explained
no DOI — not checkedThe neighbor-joining method: a new method for reconstructing phylogenetic trees
no DOI — not checkedDiscordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae)
no DOI — not checkedAngiosperms, flowering plants
no DOI — not checkedAngiosperm Phylogeny Website
no DOI — not checkedConcatenation and species tree methods exhibit statistically indistinguishable accuracy under a range of simulated conditions
no DOI — not checkedThe genome of black cottonwood, Populus trichocarpa
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