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Phylogenomics, Lineage Diversification Rates, and the Evolution of Diadromy in Clupeiformes (Anchovies, Herrings, Sardines, and Relatives)
120/120 checkable references clean · checked 2026-10-12
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
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The 120 checked references that resolve
resolves10.1016/j.ympev.2013.07.026
Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae
resolves10.1038/s41559-018-0494-6
Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary
resolves10.1111/mec.12116
Glacial cycles as an allopatric speciation pump in north‐eastern
<scp>A</scp>
merican freshwater fishes
resolves10.1093/sysbio/syab018
Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria)
resolves10.1093/sysbio/syw022
Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction
resolves10.1111/j.1461-0248.2012.01802.x
Apparent signal of competition limiting diversification after ecological transitions from marine to freshwater habitats
resolves10.1111/j.1095-8649.1978.tb04191.x
Feeding ecology of four fishes from a mangrove creek in north Queensland, Australia
resolves10.1371/journal.pone.0007504
Evidence for Repeated Independent Evolution of Migration in the Largest Family of Bats
resolves10.1006/ecss.1998.0376
The Biology and Life-history Strategies of (Teleostei: Pristigasteridae) in the Coastal Waters and Estuaries of Sarawak
resolves10.1111/j.1420-9101.2012.02464.x
Molecular phylogenetics reveals a pattern of biome conservatism in New World anchovies (family Engraulidae)
resolves10.1590/1982-0224-20180095
Systematics of Clupeiformes and testing for ecological limits on species richness in a trans-marine/freshwater clade
resolves10.1093/biolinnean/bly106
Evolution of body size and trophic position in migratory fishes: a phylogenetic comparative analysis of Clupeiformes (anchovies, herring, shad and allies)
resolves10.1186/1471-2105-7-88
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
resolves10.1111/evo.14066
Does migration promote or inhibit diversification? A case study involving the dominant radiation of temperate Southern Hemisphere freshwater fishes
resolves10.1098/rsos.192260
Large-bodied sabre-toothed anchovies reveal unanticipated ecological diversity in early Palaeogene teleosts
resolves10.1111/j.1095-8649.1984.tb04899.x
The reproductive biology and estuarine movements of the gizzard shad,
<i>Nematalosa vlaminghi</i>
(Munro)
resolves10.1186/s12862-019-1492-2
Evolutionary patterns of diadromy in fishes: more than a transitional state between marine and freshwater
resolves10.11646/zootaxa.2164.1.2
A new marine clupeoid fish from the Lower Cretaceous of the Sergipe-Alagoas Basin, northeastern Brazil
resolves10.1016/j.tree.2009.01.009
Gene tree discordance, phylogenetic inference and the multispecies coalescent
resolves10.1086/726894
Diadromy Drives Elevated Rates of Trait Evolution and Ecomorphological Convergence in Clupeiformes (Herring, Shad, and Anchovies)
resolves10.1111/jbi.13700
Reconstructing the geographic and climatic origins of long‐distance bird migrations
resolves10.1016/j.ympev.2018.03.011
Phylogenetic analysis of trophic niche evolution reveals a latitudinal herbivory gradient in Clupeoidei (herrings, anchovies, and allies)
resolves10.1007/s00227-018-3410-3
Trophic niches through ontogeny in 12 species of Indo-Pacific marine Clupeoidei (herrings, sardines, and anchovies)
resolves10.1111/jbi.14465
Time for speciation and niche conservatism explain the latitudinal diversity gradient in clupeiform fishes
resolves10.1186/1471-2148-12-194
Comparative phylogeography and demographic history of European shads (Alosa alosa and A. fallax) inferred from mitochondrial DNA
resolves10.1086/668593
Evolution of Diadromy in Fish: Insights from a Tropical Genus (<i>Kuhlia</i>Species)
resolves10.1093/biolinnean/blae046
Dine and dash: how trophic ecology and migration shape functional locomotory traits in clupeiform fishes
resolves10.1186/s40462-017-0098-9
Migration distance as a selective episode for wing morphology in a migratory insect
resolves10.1093/sysbio/syy078
Stochastic Character Mapping of State-Dependent Diversification Reveals the Tempo of Evolutionary Decline in Self-Compatible Onagraceae Lineages
resolves10.1146/annurev-ecolsys-012021-031035
Animal Migration: An Overview of One of Nature's Great Spectacles
resolves10.1111/j.1095-8649.2007.01731.x
Mitochondrial DNA evidence for high levels of gene flow among populations of a widely distributed anadromous lamprey <i>Entosphenus tridentatus</i> (Petromyzontidae)
resolves10.1111/j.1365-2656.2006.01094.x
Pattern and process in the ecological biogeography of European freshwater fish
resolves10.1093/sysbio/syq010
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
resolves10.1111/2041-210X.12949
Continuous traits and speciation rates: Alternatives to state‐dependent diversification models
resolves10.1111/mec.12197
Genetic diversity and differentiation in a wide ranging anadromous fish,
<scp>A</scp>
merican shad (
<i>
<scp>A</scp>
losa sapidissima
</i>
), is correlated with latitude
resolves10.1007/s12526-020-01115-2
Stolephorus acinaces, a new anchovy from northern Borneo, and redescription of Stolephorus andhraensis Babu Rao, 1966 (Clupeiformes: Engraulidae)
resolves10.1007/s10228-020-00778-y
Redescriptions of Dussumieria acuta Valenciennes 1847 and Dussumieria albulina (Fowler 1934), two valid species of rainbow sardines (Clupeiformes: Dussumieriidae)
resolves10.1007/s10228-020-00792-0
Taxonomic status of nominal species of the anchovy genus Stolephorus previously regarded as synonyms of Stolephorus commersonnii Lacepède 1803 and Stolephorus indicus (van Hasselt 1823), and descriptions of three new species (Clupeiformes: Engraulidae)
resolves10.1093/sysbio/syw021
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
resolves10.1073/pnas.1719358115
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
resolves10.1111/1755-0998.13287
Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics
resolves10.21276/ijaq.2005.2.2.5
Food and feeding activity of ilisha megaloptera larvae in shatt al-arab estuary
resolves10.1080/03632415.2014.966087
Putting the Red Back in Redfish Lake, 20 Years of Progress Toward Saving the Pacific Northwest's Most Endangered Salmon Population
resolves10.1093/sysbio/syaa065
Phylogenomics of Piranhas and Pacus (Serrasalmidae) Uncovers How Dietary Convergence and Parallelism Obfuscate Traditional Morphological Taxonomy
resolves10.1093/bioinformatics/btu531
AliView: a fast and lightweight alignment viewer and editor for large datasets
resolves10.1093/sysbio/syaa048
Detecting Lineage-Specific Shifts in Diversification: A Proper Likelihood Approach
resolves10.1371/journal.pone.0056485
Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes)
resolves10.1371/journal.pone.0181329
Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific
resolves10.1016/j.gene.2017.04.032
Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei
resolves10.1080/106351501753462876
A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
resolves10.1093/molbev/msj005
Heterotachy and Tree Building: A Case Study with Plastids and Eubacteria
resolves10.1080/10635150701607033
Estimating a Binary Character's Effect on Speciation and Extinction
resolves10.1093/sysbio/syu070
The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters
resolves10.1016/j.ecss.2014.01.014
High plasticity in habitat use of Lycengraulis grossidens (Clupeiformes, Engraulididae)
resolves10.1017/S0016756815000278
An Eocene anchovy from Monte Bolca, Italy: The earliest known record for the family Engraulidae
resolves10.1080/08912963.2016.1262855
The relationships of
<i>Gasteroclupea branisai</i>
Signeux, 1964, a freshwater double-armored herring (Clupeomorpha, Ellimmichthyiformes) from the Late Cretaceous-Paleocene of South America
resolves10.1093/evlett/qrad044
Commonly used Bayesian diversification methods lead to biologically meaningful differences in branch-specific rates on empirical phylogenies
resolves10.1371/journal.pone.0054848
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
resolves10.1080/03014223.1997.9517529
Note on the conservation status of the giant bully,
<i>Gobiomorphus gobioides</i>
(Teleostei: Eleotridae)
resolves10.1046/j.1365-294x.1999.00560.x
Diadromy and genetic diversity in Nearctic and Palearctic fishes
resolves10.1046/j.1467-2960.2001.00050.x
Diadromy, diversity and divergence: implications for speciation processes in fishes
resolves10.1590/S1519-69842013000400003
Management of fishing of the Broadband Anchovy (Anchoviella lepidentostole) (Fowler, 1911), in south São Paulo State, Brazil
resolves10.1073/pnas.1206625109
Resolution of ray-finned fish phylogeny and timing of diversification
resolves10.1073/pnas.1115169109
Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes
resolves10.1111/jeb.13381
Why are red flowers so rare? Testing the macroevolutionary causes of tippiness
resolves10.1093/molbev/msu300
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1111/j.1365-294X.2007.03593.x
Independent evolutionary origins of landlocked alewife populations and rapid parallel evolution of phenotypic traits
resolves10.1111/j.1558-5646.2009.00926.x
EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES
resolves10.1371/journal.pone.0089543
Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
resolves10.1111/2041-210X.12199
<scp>BAMM</scp>
tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
resolves10.1093/sysbio/syv066
A Robust Semi-Parametric Test for Detecting Trait-Dependent Diversification
resolves10.1111/evo.13227
FiSSE: A simple nonparametric test for the effects of a binary character on lineage diversification rates
resolves10.1038/s41586-018-0273-1
An inverse latitudinal gradient in speciation rate for marine fishes
resolves10.1111/j.2041-210X.2011.00169.x
phytools: an R package for phylogenetic comparative biology (and other things)
resolves10.1073/pnas.2006511117
Evolutionary determinism and convergence associated with water-column transitions in marine fishes
resolves10.1080/10635150701397643
Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies
resolves10.1007/BF00001543
The evolution of migration and some life history parameters in marine fishes
resolves10.1093/icb/31.1.205
Life History Consequences of Bioenergetic and Biomechanical Constraints on Migration
resolves10.1093/sysbio/syab028
Phylogenomics and Historical Biogeography of Seahorses, Dragonets, Goatfishes, and Allies (Teleostei: Syngnatharia): Assessing Factors Driving Uncertainty in Biogeographic Inferences
resolves10.1093/molbev/msw079
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
resolves10.1071/MF01077
Influence of altered freshwater flow regimes on abundance of larval and juvenile
<i>Gilchristella aestuaria</i>
(Pisces : Clupeidae) in the upper reaches of two South African estuaries
resolves10.1093/sysbio/syab014
Delayed Adaptive Radiation among New Zealand Stream Fishes: Joint Estimation of Divergence Time and Trait Evolution in a Newly Delineated Island Species Flock
resolves10.1111/2041-210X.13153
Tip rates, phylogenies and diversification: What are we estimating, and how good are the estimates?
resolves10.1111/2041-210X.13750
RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes
resolves10.1139/cjfas-2016-0136
Nutrient loading by anadromous fishes: species-specific contributions and the effects of diversity
resolves10.1111/j.1558-5646.1991.tb02638.x
EVOLUTION OF GENERALISTS AND SPECIALISTS IN SPATIALLY HETEROGENEOUS ENVIRONMENTS
resolves10.1086/696877
Reduced Swimming Performance Repeatedly Evolves on Loss of Migration in Landlocked Populations of Alewife
resolves10.1016/j.ympev.2022.107590
Molecular phylogenetics of the Clupeiformes based on exon-capture data and a new classification of the order
resolves10.2989/025776196784158644
<i>Gilchristella aestuaria</i>(Pisces: Clupeidae) biomass and consumption of zooplankton in the Sundays Estuary
resolves10.1046/j.1523-1739.1995.09030489.x
Anadromous Fish as Keystone Species in Vertebrate Communities
resolves10.1073/pnas.1405000111
Temperate origins of long-distance seasonal migration in New World songbirds
resolves10.1093/molbev/msn283
Explosive Speciation of Takifugu: Another Use of Fugu as a Model System for Evolutionary Biology
resolves10.1111/j.1439-0426.2008.01071.x
Differences in reproductive strategies between obscure puffer<i>Takifugu obscurus</i>and ocellated puffer<i>Takifugu ocellatus</i>during their spawning migration
resolves10.1007/978-3-319-67979-2_4
ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches
resolves10.1186/s12859-018-2129-y
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
The 32 references without a DOI — listed, not checked
no DOI — not checkedField guide to the freshwater fishes of Australia
no DOI — not checkedConstraints on the timescale of animal evolutionary history
no DOI — not checkedThe tree of life and a new classification of bony fishes
no DOI — not checkedDecadal studies on Hilsa and its fishery in India-a review
no DOI — not checkedThe evolutionary origins of diadromy inferred from a time-calibrated phylogeny for Clupeiformes (herring and allies)
no DOI — not checkedMulti-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
no DOI — not checkedModel Selection and Multi-model Inference: A Practical Information-theoretic Approach
no DOI — not checkedMigratory lineages rapidly evolve larger body sizes than non-migratory relatives in ray-finned fishes
no DOI — not checkedLa faune ichthyologique de l’Yprésien de la Belgique
no DOI — not checkedHigh dispersal ability inhibits speciation in a continental radiation of passerine birds
no DOI — not checkedGHOST: recovering historical signal from heterotachously evolved sequence alignments
no DOI — not checkedThe biology of Pellonula Leonensis Boulenger, 1916 (Osteichthyes: Clupeidae) in Anambra River, Nigeria
no DOI — not checkedInferring phylogenies
no DOI — not checkedRecent and fossil clupeomorph fishes with materials for revision of the subgroups of clupeoids
no DOI — not checked2025051620020942500_CIT0074
no DOI — not checkedThe fishes of the inland waters of Southeast Asia: a catalogue and core bibliography of the fishes known to occur in freshwaters, mangroves and estuaries
no DOI — not checkedHandbook of European freshwater fishes
no DOI — not checkedSpawning of Nematalosa nasus Bloch in Piollaimadom lagoon at Mandapam
no DOI — not checkedAmerican shad in its native range
no DOI — not checkedA well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
no DOI — not checkedA new predatory herring-like fish (Teleostei: Clupeiformes) from the early Cretaceous of Brazil, and implications for relationships in the Clupeoidei
no DOI — not checkedBiology of the Atlantic shad, Alosa fallax fallax, in Kurshskiy Bay
no DOI — not checkedDiadromy in fishes: migrations between freshwater and marine environments
no DOI — not checkedFirst fossil record (Plio-Pleistocene) of threadfin shad, Dorosoma petenense, from the Gatuna Formation of southeastern New Mexico
no DOI — not checkedCODA: convergence diagnosis and output analysis for MCMC
no DOI — not checkedR: A language and environment for statistical computing
no DOI — not checkedFishes of the Cambodian Mekong
no DOI — not checkedTreeAnnotator v1.8.2. MCMC Output analysis
no DOI — not checkedBreeding seasonality of Anodontostoma chacunda (Hamilton, 1822) off Mangalore coast, Karnataka, India
no DOI — not checkedSettling down of seasonal migrants promotes bird diversification
no DOI — not checkedClupeoid fishes of the World (Suborder Clupeoidei): An annotated and illustrated catalogue of the herrings, sardines, pilchards, sprats, shads, anchovies and wolf herrings. Part 1. Chirocentridae, Clupeidae and Pristigasteridae
no DOI — not checkedClupeoid fishes of the World (Suborder Clupeoidei): an annotated and illustrated catalogue of the herrings, sardines, pilchards, sprats, shads, anchovies and wolf herrings. Part 2. Engraulididae
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