Reference health
Using Supermatrices for Phylogenetic Inquiry: An Example Using the Sedges
51/51 checkable references clean · checked 2026-08-03
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
10 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 51 checked references that resolve
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Sedge genera of the world: Relationships and a new classification of the Cyperaceae
resolves10.2307/25065583
Molecular phylogenetics of
<i>Oreobolus</i>
(Cyperaceae) and the origin and diversification of the American species
resolves10.1093/sysbio/syr079
Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?
resolves10.1016/j.ympev.2010.01.036
Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae)
resolves10.1093/nar/gkh340
MUSCLE: multiple sequence alignment with high accuracy and high throughput
resolves10.5642/aliso.20072301.12
Phylogeny of Abildgaardieae (Cyperaceae) Inferred from ITS and trnL–F Data
resolves10.1002/tax.593004
The origins of
<i>Eleocharis</i>
(Cyperaceae) and the status of
<i>Websteria</i>
,
<i>Egleria</i>
, and
<i>Chillania</i>
resolves10.3732/ajb.0800252
Stem architecture in <i>Eleocharis</i> subgenus <i>Limnochloa</i> (Cyperaceae): Evidence of dynamic morphological evolution in a group of pantropical sedges
resolves10.1093/gbe/evq016
Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm
resolves10.1080/10635150252899824
Fragmentary Taxa, Missing Data, and Ambiguity: Mistaken Assumptions and Conclusions
resolves10.1093/sysbio/syp017
The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference
resolves10.1186/1471-2148-11-152
PhyDesign: an online application for profiling phylogenetic informativeness
resolves10.1080/10635150600999150
Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes
resolves10.1111/j.1461-0248.2007.01020.x
Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography
resolves10.1046/j.1095-8339.2002.138002145.x
Phylogenetic relationships in Cyperus L. s.l. (Cyperaceae) inferred from plastid DNA sequence data
resolves10.1007/s12229-008-9019-3
Phylogeny of Cyperaceae Based on DNA Sequence Data: Current Progress and Future Prospects
resolves10.2307/2666645
Infrageneric Classification of Eleocharis (Cyperaceae) Revisited: Evidence from the Internal Transcribed Spacer (ITS) Region of Nuclear Ribosomal DNA
resolves10.1600/036364410791638270
Phylogenetic Relationships in <i>Eleocharis</i> (Cyperaceae): C<sub>4</sub> Photosynthesis Origins and Patterns of Diversification in the Spikerushes
resolves10.1186/1471-2148-10-155
Phylogenomics with incomplete taxon coverage: the limits to inference
resolves10.5642/aliso.20072301.09
Phylogeny of Cyperaceae Based on DNA Sequence Data–a New rbcL Analysis
resolves10.1186/1471-2148-9-37
Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches
resolves10.1126/science.1163197
Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
resolves10.1093/bioinformatics/btm619
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
resolves10.1093/bioinformatics/btl446
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
resolves10.1007/s12229-008-9020-x
Phylogeny and Evolution in Cariceae (Cyperaceae): Current Knowledge and Future Directions
resolves10.1111/j.1365-2699.2007.01841.x
High tropical net diversification drives the New World latitudinal gradient in palm (Arecaceae) species richness
resolves10.1007/s12229-008-9023-7
A Preliminary Molecular Phylogeny of the Rhynchosporeae (Cyperaceae)
resolves10.1093/sysbio/syp075
Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles
resolves10.1093/sysbio/syq097
Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference
resolves10.1093/sysbio/syq025
Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships
resolves10.1017/S001667231000008X
A supermatrix-based molecular phylogeny of the family Drosophilidae
resolves10.1016/j.ympev.2005.05.012
A phylogeny of the schoenoid sedges (Cyperaceae: Schoeneae) based on plastid DNA sequences, with special reference to the genera found in Africa
resolves10.1007/s12229-008-9024-6
Phylogeny, Species Richness, and Ecological Specialization in Cyperaceae Tribe Cariceae
resolves10.1126/science.1135590
The Latitudinal Gradient in Recent Speciation and Extinction Rates of Birds and Mammals
resolves10.1671/0272-4634(2003)023[0297:ITICAP]2.0.CO;2
Incomplete taxa, incomplete characters, and phylogenetic accuracy: is there a missing data problem?
resolves10.1093/sysbio/syr025
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
resolves10.1111/j.1096-0031.2009.00281.x
Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)
resolves10.1016/j.ympev.2005.02.008
Identifying optimal incomplete phylogenetic data sets from sequence databases
resolves10.1007/s10265-004-0173-3
Molecular phylogeny of Japanese Eleocharis (Cyperaceae) based on ITS sequence data, and chromosomal evolution
resolves10.2307/2666691
Molecular Systematics of Cyperaceae Tribe Cariceae Based on Two Chloroplast DNA Regions: ndhF and trnL Intron-Intergenic Spacer
resolves10.1016/j.ympev.2003.09.004
Phylogenetic relationships of Carpha and its relatives (Schoeneae, Cyperaceae) inferred from chloroplast trnL intron and trnL–trnF intergenic spacer sequences
The 10 references without a DOI — listed, not checked
no DOI — not checkedPruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice
no DOI — not checkedCyperaceae
no DOI — not checkedWorld checklist of Cyperaceae
no DOI — not checkedSuprageneric phylogeny of Japanese Cyperaceae based on DNA sequences from chloroplast ndhF and 5.8 S nuclear ribosomal DNA
no DOI — not checkedMesquite: a modular system for evolutionary analysis
no DOI — not checkedA phylogeny of Isolepis (Cyperaceae) inferred using plastid rbcL and trnL-F sequence data
no DOI — not checkedSedges: uses, diversity, and systematics of the Cyperaceae
no DOI — not checkedPhylogenetic relationships in Cariceae (Cyperaceae) based on ITS (nrDNA) and trnT-LF (cpDNA) region sequences: assessment of subgeneric and sectional relationships in Carex with emphasis on section Acrocystis
no DOI — not checkedAngiosperm Phylogeny Website
no DOI — not checkedgplots package for R statistical framework
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