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Speciation with Gene Flow in North American<i>Myotis</i>Bats

https://doi.org/10.1093/sysbio/syw100
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51/51 checkable references clean · checked 2026-07-25

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

11 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 51 checked references that resolve
resolves10.1007/978-0-387-74075-1
Model Based Inference in the Life Sciences: A Primer on Evidence
resolves10.1016/j.ecolmodel.2011.02.011
The crucial role of the accessible area in ecological niche modeling and species distribution modeling
resolves10.1098/rspb.2005.3276
Functional versatility supports coral reef biodiversity
resolves10.1016/j.ympev.2004.06.012
Molecular phylogenetics, karyotypic diversity, and partition of the genus Myotis (Chiroptera: Vespertilionidae)
resolves10.1093/bioinformatics/btu170
Trimmomatic: a flexible trimmer for Illumina sequence data
resolves10.1111/j.1466-8238.2011.00698.x
Measuring ecological niche overlap from occurrence and spatial environmental data
resolves10.1093/sysbio/syq024
Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats
resolves10.1046/j.1365-294x.2000.01069.x
Is the Gibraltar Strait a barrier to gene flow for the bat <i>Myotis myotis</i> (Chiroptera: Vespertilionidae)?
resolves10.1093/molbev/mss075
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
resolves10.1016/j.ympev.2008.09.008
Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow
resolves10.1093/nar/gkt1196
Ensembl 2014
resolves10.1038/nbt.1523
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
resolves10.1080/10635150390235520
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
resolves10.1016/j.tree.2014.02.009
Unifying niche shift studies: insights from biological invasions
resolves10.1093/molbev/msp274
Bayesian Inference of Species Trees from Multilocus Data
resolves10.1093/molbev/msp296
Isolation with Migration Models for More Than Two Populations
resolves10.1073/pnas.0611164104
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
resolves10.1002/joc.1276
Very high resolution interpolated climate surfaces for global land areas
resolves10.1073/pnas.1412627111
Speciation with gene flow in equids despite extensive chromosomal plasticity
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1007/s10592-010-0095-7
Conservation genetic inferences in the carnivorous pitcher plant Sarracenia alata (Sarraceniaceae)
resolves10.1073/pnas.022629899
Mutation rates in mammalian genomes
resolves10.1644/09-MAMM-A-192.1
Molecular phylogenetics of<i>Myotis</i>indicate familial-level divergence for the genus<i>Cistugo</i>(Chiroptera)
resolves10.1371/journal.pone.0046578
Genetic Diversity of Neotropical Myotis (Chiroptera: Vespertilionidae) with an Emphasis on South American Species
resolves10.1093/sysbio/syt049
The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1093/bioinformatics/btp352
The Sequence Alignment/Map format and SAMtools
resolves10.1093/bioinformatics/btp187
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
resolves10.1093/bioinformatics/btr642
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
resolves10.1093/bioinformatics/btq062
Phybase: an R package for species tree analysis
resolves10.1093/sysbio/46.3.523
Gene Trees in Species Trees
resolves10.1101/gr.159426.113
Genome-wide evidence for speciation with gene flow in <i>Heliconius</i> butterflies
resolves10.1101/gr.125864.111
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
resolves10.1111/j.1365-294X.2008.03715.x
Speciation with gene flow could be common
resolves10.1111/mec.12049
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the <scp>N</scp>orth <scp>A</scp>merican tiger salamander (<i><scp>A</scp>mbystoma tigrinum</i>) species complex
resolves10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
Terrestrial Ecoregions of the World: A New Map of Life on Earth
resolves10.1073/pnas.1106085108
Speciation with gene flow on Lord Howe Island
resolves10.1146/annurev-ecolsys-102209-144644
Divergence with Gene Flow: Models and Data
resolves10.1093/genetics/164.4.1645
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
resolves10.1093/sysbio/syt057
Poor Fit to the Multispecies Coalescent is Widely Detectable in Empirical Data
resolves10.1006/mpev.2001.1017
Molecular Systematics of Bats of the Genus Myotis (Vespertilionidae) Suggests Deterministic Ecomorphological Convergences
resolves10.1016/j.ympev.2013.08.011
Molecular phylogenetic reconstructions identify East Asia as the cradle for the evolution of the cosmopolitan genus Myotis (Mammalia, Chiroptera)
resolves10.1128/AEM.01541-09
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
resolves10.1093/genetics/123.3.603
A cladistic measure of gene flow inferred from the phylogenies of alleles.
resolves10.1111/j.1600-0587.2009.06074.x
Niche and area of distribution modeling: a population ecology perspective
resolves10.1073/pnas.0901637106
Niches and distributional areas: Concepts, methods, and assumptions
resolves10.1016/j.ympev.2006.06.019
Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1086/379378
A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
resolves10.1086/319501
A New Statistical Method for Haplotype Reconstruction from Population Data
resolves10.1101/gr.074492.107
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
The 11 references without a DOI — listed, not checked
no DOI — not checkedDewey T.A. 2006. Systematics and phylogeography of North American Myotis . PhD dissertation: University of Michigan.
no DOI — not checkedFaircloth B.C. 2013. Illumiprocessor: a trimmomatic wrapper for parallel adapter and quality trimming. http://dx.doi.org/10.6079/J9ILL.
no DOI — not checked2016123018051612000_syw100v2.15
no DOI — not checkedHarris R.S. 2007. Improved pairwise alignment of genomic DNA. PhD Thesis: The Pennsylvania State University.
no DOI — not checkedJackson N. Morales A. Carstens B.C. O’Meara B.C. Forthcoming. PHRAPL: phylogeographic inference using approximate likelihoods. Syst. Biol.
no DOI — not checkedKnowles L.L. Kubatko L.S. 2010. Estimating species trees: an introduction to concepts and models. In: Knowles L.L. Kubatko L.S. editors. Estimating species trees: practical and theoretical aspects. Wiley-Blackwell. p. 1–14.
no DOI — not checkedKutner M.H. Nachtsheim C.J. Neter J. 2004. Applied linear regression models. New York: McGraw-Hill Irwin.
no DOI — not checkedRambaut A. Suchard M.A. Xie D. Drummond A.J. 2014. Tracer v1.6. http://beast.bio.ed.ac.uk/Tracer.
no DOI — not checked2016123018051612000_syw100v2.52
no DOI — not checkedSimmons N.B. 2005. Order Chiroptera: mammal species of the world: a taxonomic and geographic reference. In: Wilson D.E Reeder D.M. editors. Mammal species of the world. Baltimore: Johns Hopkins University Press. p. 312–529.
no DOI — not checkedWarnes G.R. Bolker B. Bonebakker L. Gentleman R. Liaw W.H.A. Lumley T. Maechler M. Magnusson A. Moeller S. Schwartz M. Venables B. 2014. gplots: various R programming tools for plotting data, R package version 2.6.0.
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