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Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells

32/32 checkable references clean · checked 2026-08-19

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

The 32 checked references that resolve

resolves10.1038/icb.2015.106

Single‐cell technologies are revolutionizing the approach to rare cells

resolves10.1093/hmg/ddw192

Genetics and immunity in the era of single-cell genomics

resolves10.1016/j.cell.2015.10.039

Design and Analysis of Single-Cell Sequencing Experiments

resolves10.1016/j.molcel.2015.04.005

The Technology and Biology of Single-Cell RNA Sequencing

resolves10.1038/nbt.3711

Revealing the vectors of cellular identity with single-cell genomics

resolves10.1186/s13059-016-0927-y

Design and computational analysis of single-cell RNA-sequencing experiments

resolves10.12688/f1000research.7223.1

Single-cell transcriptome sequencing: recent advances and remaining challenges

resolves10.1101/gr.161034.113

From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing

resolves10.3389/fgene.2016.00163

Single-Cell Transcriptomics Bioinformatics and Computational Challenges

resolves10.1186/s13059-016-0881-8

A survey of best practices for RNA-seq data analysis

resolves10.1186/s13059-015-0697-y

The impact of read length on quantification of differentially expressed genes and splice junction detection

resolves10.1038/nbt.2967

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

resolves10.1038/icb.2016.32

A synergistic combination: using RNAseq to decipher both T‐cell receptor sequence and transcriptional profile of individual T cells

resolves10.1038/nri1292

The many important facets of T-cell repertoire diversity

resolves10.1038/nature13954

PD-1 blockade induces responses by inhibiting adaptive immune resistance

resolves10.1038/ncomms9081

High-resolution analysis of the human T-cell receptor repertoire

resolves10.1038/icb.2016.16

Linking the T cell receptor to the single cell transcriptome in antigen‐specific human T cells

resolves10.1038/nmeth.3800

T cell fate and clonality inference from single-cell transcriptomes

resolves10.1093/nar/30.1.207

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

resolves10.1093/nar/gkg091

ArrayExpress--a public repository for microarray gene expression data at the EBI

resolves10.1016/j.cell.2015.11.009

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

resolves10.1038/ncomms10220

A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages

resolves10.1016/j.celrep.2014.04.011

Single-Cell RNA Sequencing Reveals T Helper Cells Synthesizing Steroids De Novo to Contribute to Immune Homeostasis

resolves10.1038/nprot.2014.006

Full-length RNA-seq from single cells using Smart-seq2

resolves10.1093/nar/gku1056

IMGT®, the international ImMunoGeneTics information system® 25 years on

resolves10.1101/068775

CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-Seq data

resolves10.1242/jcs.024646

Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 ( <i>GAS5</i> )

resolves10.1126/science.1247651

Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types

resolves10.1093/bioinformatics/btu170

Trimmomatic: a flexible trimmer for Illumina sequence data

resolves10.1038/nbt.2859

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

resolves10.1016/j.tig.2013.05.010

Human housekeeping genes, revisited

resolves10.1093/nar/gkr965

AnimalTFDB: a comprehensive animal transcription factor database

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