Reference health
Multilocus DNA barcoding – Species Identification with Multilocus Data
1 of 63 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
10 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.2307/2291091
The 62 checked references that resolve
resolves10.1186/1471-2164-13-403
Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
resolves10.1371/journal.pone.0161531
Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens
resolves10.1111/j.1755-0998.2011.03108.x
S
<scp>pider</scp>
: An R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
resolves10.1111/1755-0998.12304
<scp>DNA</scp> barcoding gap: reliable species identification over morphological and geographical scales
resolves10.1186/s13071-014-0569-4
DNA barcoding: complementing morphological identification of mosquito species in Singapore
resolves10.1371/journal.pone.0028381
Barcoding and Border Biosecurity: Identifying Cyprinid Fishes in the Aquarium Trade
resolves10.1093/sysbio/syu060
Known Knowns, Known Unknowns, Unknown Unknowns and Unknown Knowns in DNA Barcoding: A Comment on Dowton et al.
resolves10.1111/1755-0998.12445
Taxonomic challenges in freshwater fishes: a mismatch between morphology and<scp>DNA</scp>barcoding in fish of the north‐eastern part of the Congo basin
resolves10.1093/sysbio/syu028
A Preliminary Framework for DNA Barcoding, Incorporating the Multispecies Coalescent
resolves10.1007/s12686-011-9548-7
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
resolves10.1111/j.1365-294X.2005.02553.x
Detecting the number of clusters of individuals using the software <scp>structure</scp>: a simulation study
resolves10.1093/bioinformatics/btr124
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
resolves10.1146/annurev.ecolsys.34.011802.132421
Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA
resolves10.1111/1755-0998.12020
Efficient distinction of invasive aquatic plant species from non‐invasive related species using <scp>DNA</scp> barcoding
resolves10.1371/journal.pone.0138231
The Use of DNA Barcoding in Identification and Conservation of Rosewood (Dalbergia spp.)
resolves10.1371/journal.pone.0157881
DNA Barcoding of Malagasy Rosewoods: Towards a Molecular Identification of CITES-Listed Dalbergia Species
resolves10.1371/journal.pone.0067908
Targeted Enrichment: Maximizing Orthologous Gene Comparisons across Deep Evolutionary Time
resolves10.1371/journal.pone.0040627
Cryptic Diversity in Indo-Australian Rainbowfishes Revealed by DNA Barcoding: Implications for Conservation in a Biodiversity Hotspot Candidate
resolves10.1111/j.1558-5646.2008.00543.x
DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (<i>MALURUS MELANOCEPHALUS</i>)
resolves10.1111/j.1755-0998.2012.03167.x
EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies
resolves10.1111/1755-0998.12279
DNA barcoding of Murinae (Rodentia: Muridae) and Arvicolinae (Rodentia: Cricetidae) distributed in China
resolves10.1371/journal.pone.0028655
DNA Barcoding Identifies Argentine Fishes from Marine and Brackish Waters
resolves10.3897/zookeys.365.5905
Using DNA barcoding to differentiate invasive Dreissena species (Mollusca, Bivalvia)
resolves10.1371/journal.pone.0054848
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
resolves10.1080/10635150600969864
DNA Barcoding and Taxonomy in Diptera: A Tale of High Intraspecific Variability and Low Identification Success
resolves10.1093/sysbio/syu063
Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting
resolves10.1093/bioinformatics/btv234
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
resolves10.1111/1755-0998.12060
<scp>DNA</scp> barcoding for conservation, seed banking and ecological restoration of <i>Acacia</i> in the Midwest of Western Australia
resolves10.1111/j.1471-8286.2005.01155.x
<scp>genalex</scp> 6: genetic analysis in Excel. Population genetic software for teaching and research
resolves10.1111/j.1365-294X.2011.05239.x
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
resolves10.1093/genetics/164.4.1645
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
resolves10.1016/j.ympev.2014.02.021
The incidence of species-level paraphyly in animals: A re-assessment
resolves10.1111/1755-0998.12487
Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African <i>Oxalis</i> (Oxalidaceae)
resolves10.1371/journal.pone.0122164
Mapping Biodiversity and Setting Conservation Priorities for SE Queensland’s Rainforests Using DNA Barcoding
resolves10.1093/molbev/msr148
Multiple Genome Alignments Facilitate Development of NPCL Markers: A Case Study of Tetrapod Phylogeny Focusing on the Position of Turtles
resolves10.1038/msb.2011.75
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
resolves10.1098/rstb.2005.1714
DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar
resolves10.3897/zookeys.365.6034
Adhoc: an R package to calculate ad hoc distance thresholds for DNA barcoding identification
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1111/j.1755-0998.2011.03040.x
Recent discoveries of armyworms in Japan and their species identification using DNA barcoding
resolves10.1371/journal.pone.0028832
DNA Barcoding for Community Ecology - How to Tackle a Hyperdiverse, Mostly Undescribed Melanesian Fauna
resolves10.1371/journal.pone.0030490
DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods
resolves10.1098/rstb.2005.1717
Deciphering amphibian diversity through DNA barcoding: chances and challenges
resolves10.1371/journal.pone.0031581
Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case
resolves10.1111/j.1365-294X.2006.02999.x
DNA barcoding reveals extraordinary cryptic diversity in an amphipod genus: implications for desert spring conservation
resolves10.1186/s12862-016-0714-0
Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)
resolves10.1111/1755-0998.12532
Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms
resolves10.1016/j.ympev.2008.05.031
Mitochondrial diversity and phylogeography of the Chinese perch, Siniperca chuatsi (Perciformes: Sinipercidae)
The 10 references without a DOI — listed, not checked
no DOI — not checkeda new species of gobiid fish (Pisces: Gobiidae) from Atlantic slope streams of Costa Rica. Rev. Biol. Trop
no DOI — not checkedChabarria RE . 2015. Evolution of the genus Sicydium (Gobiidae: Sicydiinae).Department of Life Sciences. Corpus Christi, TX, Texas A&M University - Corpus Christi.
no DOI — not checkedGeographical distribution of the Sinipercine fishes
no DOI — not checkedPhylogeny of the sinipercine fishes with some taxonomic notes
no DOI — not checkedASTRAL: genome-scale coalescent-based species tree estimation
no DOI — not checkedNelson JS . 2006. Fishes of the world. 4th ed. New York, John Wiley and Sons, Inc.
no DOI — not checkedR_Core_Team. 2015. R: A language and environment for statistical computing. Vienna, Austria., R Foundation for Statistical Computing.
no DOI — not checkedRoutine DNA barcoding of Canadian Gracilariales (Rhodophyta) reveals the invasive species Gracilaria vermiculophylla in British Columbia
no DOI — not checkedCombining morphology, DNA sequences, and morphometrics: revising closely related species in the orb-weaving spider genus Araniella (Araneae, Araneidae)
no DOI — not checkedOn the classification and distribution of the sinipercinae fishes (family Serranidae)
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work were clean at the dated check: each resolved to a known work in a public registry, and none
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