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Identifying predictors of HPV-related head and neck squamous cell carcinoma progression and survival through patient-derived models

https://doi.org/10.1101/652537
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1 of 55 checkable references need attention · checked 2026-07-23

At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.

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References needing attention

does not resolve to a known work10.1128/mSphere.00580
The 54 checked references that resolve
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Epidemiology of Human Papillomavirus–Positive Head and Neck Squamous Cell Carcinoma
resolves10.1016/j.ctro.2017.10.005
Treatment de-escalation for HPV-driven oropharyngeal cancer: Where do we stand?
resolves10.1056/NEJMoa0912217
Human Papillomavirus and Survival of Patients with Oropharyngeal Cancer
resolves10.1016/S0140-6736(18)32779-X
Radiotherapy plus cetuximab or cisplatin in human papillomavirus-positive oropharyngeal cancer (NRG Oncology RTOG 1016): a randomised, multicentre, non-inferiority trial
resolves10.1016/S0140-6736(18)32752-1
Radiotherapy plus cisplatin or cetuximab in low-risk human papillomavirus-positive oropharyngeal cancer (De-ESCALaTE HPV): an open-label randomised controlled phase 3 trial
resolves10.3389/fonc.2017.00129
Prognostic Impact of AJCC/UICC 8th Edition New Staging Rules in Oropharyngeal Squamous Cell Carcinoma
resolves10.1172/jci.insight.124762
Variations in HPV function are associated with survival in squamous cell carcinoma
resolves10.1016/j.molimm.2018.02.005
Immunological network analysis in HPV associated head and neck squamous cancer and implications for disease prognosis
resolves10.1158/1078-0432.CCR-19-0211
Rapid Clearance Profile of Plasma Circulating Tumor HPV Type 16 DNA during Chemoradiotherapy Correlates with Disease Control in HPV-Associated Oropharyngeal Cancer
resolves10.1002/ijc.32412
Identification of prognostic molecular biomarkers in 157 HPV‐positive and HPV‐negative squamous cell carcinomas of the oropharynx
resolves10.1016/j.celrep.2018.10.007
Genomic and Transcriptomic Characterization Links Cell Lines with Aggressive Head and Neck Cancers
resolves10.18632/oncotarget.21174
Genomic characterization of human papillomavirus-positive and -negative human squamous cell cancer cell lines
resolves10.1002/lary.26679
Barriers to generating PDX models of HPV‐related head and neck cancer
resolves10.1016/j.chembiol.2017.06.012
Tumor Organoids as a Pre-clinical Cancer Model for Drug Discovery
resolves10.1158/2159-8290.CD-14-0001
Patient-Derived Xenograft Models: An Emerging Platform for Translational Cancer Research
resolves10.1007/s10555-016-9653-x
Patient-derived xenograft (PDX) models in basic and translational breast cancer research
resolves10.1158/0008-5472.CAN-12-4704
ALDH1-Positive Cancer Stem Cells Predict Engraftment of Primary Breast Tumors and Are Governed by a Common Stem Cell Program
resolves10.1007/s10549-015-3585-y
Prognostic and functional importance of the engraftment-associated genes in the patient-derived xenograft models of triple-negative breast cancers
resolves10.1016/j.celrep.2018.10.004
Patient-Derived Xenografts for Prognostication and Personalized Treatment for Head and Neck Squamous Cell Carcinoma
resolves10.1200/JCO.2016.68.2955
Human Papillomavirus Drives Tumor Development Throughout the Head and Neck: Improved Prognosis Is Associated With an Immune Response Largely Restricted to the Oropharynx
resolves10.1126/science.1208130
The Mutational Landscape of Head and Neck Squamous Cell Carcinoma
resolves10.1126/science.1206923
Exome Sequencing of Head and Neck Squamous Cell Carcinoma Reveals Inactivating Mutations in <i>NOTCH1</i>
resolves10.1186/gm453
Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumors
resolves10.1038/nature14129
Comprehensive genomic characterization of head and neck squamous cell carcinomas
resolves10.1158/1078-0432.CCR-13-3310
Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas
resolves10.1093/annonc/mdv109
Genomic alterations in head and neck squamous cell carcinoma determined by cancer gene-targeted sequencing
resolves10.1002/cncr.30570
<i>TRAF3/CYLD</i> mutations identify a distinct subset of human papillomavirus‐associated head and neck squamous cell carcinoma
resolves10.1371/journal.pone.0191701
Genomic analysis of head and neck cancer cases from two high incidence regions
resolves10.1016/j.oraloncology.2018.06.010
Oncogenic drivers in 11q13 associated with prognosis and response to therapy in advanced oropharyngeal carcinomas
resolves10.1002/cncr.32068
Mutation of chromatin regulators and focal hotspot alterations characterize human papillomavirus–positive oropharyngeal squamous cell carcinoma
resolves10.1158/2159-8290.CD-17-0321
Accelerating Discovery of Functional Mutant Alleles in Cancer
resolves10.1038/nbt.3391
Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity
resolves10.1158/1078-0432.CCR-17-3535
Loss of Function of Canonical Notch Signaling Drives Head and Neck Carcinogenesis
resolves10.1093/hmg/ddu733
Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies
resolves10.1016/j.ccell.2016.04.004
Squamous Cell Cancers: A Unified Perspective on Biology and Genetics
resolves10.1002/ijc.30081
Characterization of functionally active gene fusions in human papillomavirus related oropharyngeal squamous cell carcinoma
resolves10.1073/pnas.1009933108
Human papillomavirus E7 oncoprotein induces KDM6A and KDM6B histone demethylase expression and causes epigenetic reprogramming
resolves10.1073/pnas.1310432110
Tumor suppressor p16 <sup>INK4A</sup> is necessary for survival of cervical carcinoma cell lines
resolves10.1158/0008-5472.CAN-13-2479
p16INK4a Impairs Homologous Recombination–Mediated DNA Repair in Human Papillomavirus–Positive Head and Neck Tumors
resolves10.3389/fonc.2018.00095
CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma
resolves10.1172/jci.insight.122799
Improved outcomes in PI3K-pathway-altered metastatic HPV oropharyngeal cancer
resolves10.1158/1535-7163.MCT-17-0386
Tumor Mutational Burden as an Independent Predictor of Response to Immunotherapy in Diverse Cancers
resolves10.1056/NEJMoa1801946
Nivolumab plus Ipilimumab in Lung Cancer with a High Tumor Mutational Burden
resolves10.1126/science.aaa1348
Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer
resolves10.1038/s41588-018-0312-8
Tumor mutational load predicts survival after immunotherapy across multiple cancer types
resolves10.1186/s13073-015-0219-2
Mutational landscapes of tongue carcinoma reveal recurrent mutations in genes of therapeutic and prognostic relevance
resolves10.1016/j.stem.2008.08.001
Notch Signaling Regulates Mammary Stem Cell Function and Luminal Cell-Fate Commitment
resolves10.1083/jcb.200403156
p107 regulates neural precursor cells in the mammalian brain
resolves10.1084/jem.20110198
Notch signaling inhibits hepatocellular carcinoma following inactivation of the RB pathway
resolves10.1158/2159-8290.CD-12-0095
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
resolves10.1038/nature20805
Integrated genomic characterization of oesophageal carcinoma
resolves10.1016/j.cell.2018.03.022
Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
resolves10.1093/nar/gkv468
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
resolves10.1136/jmg.2005.033498
Comprehensive analysis of <i>CDKN2A</i> (p16<sup>INK4A</sup>/p14<sup>ARF</sup>) and <i>CDKN2B</i> genes in 53 melanoma index cases considered to be at heightened risk of melanoma
The 1 reference without a DOI — listed, not checked
no DOI — not checkedApproach to evaluating tumor mutational burden in routine clinical practice
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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