Reference health

Linking photoreceptor excitation to changes in plant architecture

https://doi.org/10.1101/gad.187849.112
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34/34 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 34 checked references that resolve
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Requirement of B2-Type<i>Cyclin-Dependent Kinases</i>for Meristem Integrity in<i>Arabidopsis thaliana</i>
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Shade avoidance
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Phytochromes and Shade-avoidance Responses in Plants
resolves10.1073/pnas.1110682108
PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature
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Inhibition of the shade avoidance response by formation of non‐DNA binding bHLH heterodimers
resolves10.1093/nar/gkn923
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
resolves10.1073/pnas.0509805103
Remote sensing of future competitors: Impacts on plant defenses
resolves10.1111/j.1365-313X.2011.04598.x
Cryptochrome 1 and phytochrome B control shade‐avoidance responses in Arabidopsis via partially independent hormonal cascades
resolves10.1104/pp.110.156802
Involvement of Auxin and Brassinosteroid in the Regulation of Petiole Elongation under the Shade  
resolves10.1016/j.tplants.2010.08.003
PIFs: pivotal components in a cellular signaling hub
resolves10.1105/tpc.107.052142
The <i>Arabidopsis</i> Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels
resolves10.1016/j.cell.2008.03.029
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
resolves10.1105/tpc.104.029272
Sites and Regulation of Auxin Biosynthesis in Arabidopsis Roots
resolves10.1111/j.1365-313X.2007.03341.x
Phytochrome‐mediated inhibition of shade avoidance involves degradation of growth‐promoting bHLH transcription factors
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Direct Targeting of Light Signals to a Promoter Element-Bound Transcription Factor
resolves10.1073/pnas.1108434108
The main auxin biosynthesis pathway in <i>Arabidopsis</i>
resolves10.1371/journal.pbio.0020258
Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis
resolves10.1105/tpc.110.075267
<i>vanishing tassel2</i>Encodes a Grass-Specific Tryptophan Aminotransferase Required for Vegetative and Reproductive Development in Maize    
resolves10.1104/pp.108.133496
Auxin and Ethylene Regulate Elongation Responses to Neighbor Proximity Signals Independent of Gibberellin and DELLA Proteins in Arabidopsis      
resolves10.1126/science.1167206
A Functional Genomics Approach Reveals CHE as a Component of the <i>Arabidopsis</i> Circadian Clock
resolves10.1002/j.1460-2075.1996.tb00743.x
Combinatorial interplay of promoter elements constitutes the minimal determinants for light and developmental control of gene expression in Arabidopsis.
resolves10.1105/tpc.5.2.147
Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development.
resolves10.1038/nature02174
Gating of the rapid shade-avoidance response by the circadian clock in plants
resolves10.1093/icb/43.3.459
The Adaptive Evolution of Plasticity: Phytochrome-Mediated Shade Avoidance Responses
resolves10.1101/gad.364005
A dynamic balance between gene activation and repression regulates the shade avoidance response in <i>Arabidopsis</i>
resolves10.1105/tpc.105.031625
Auxin and Light Control of Adventitious Rooting in Arabidopsis Require ARGONAUTE1
resolves10.1016/j.cell.2008.01.049
Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants
resolves10.1038/nbt.1621
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
resolves10.1073/pnas.1108436108
Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF <i>ARABIDOPSIS</i> and YUCCAs in <i>Arabidopsis</i>
resolves10.1126/science.291.5502.306
A Role for Flavin Monooxygenase-Like Enzymes in Auxin Biosynthesis
resolves10.1126/science.1084161
SIR1, an Upstream Component in Auxin Signaling Identified by Chemical Genetics
The 1 reference without a DOI — listed, not checked
no DOI — not checkedAutomated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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