Reference health

GeneWise and Genomewise

https://doi.org/10.1101/gr.1865504
CiteStamped reference-health badge
24/24 checkable references clean · checked 2026-08-07

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

4 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 24 checked references that resolve
resolves10.1101/gr.424203
SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
resolves10.1126/science.1072104
Whole-Genome Shotgun Assembly and Analysis of the Genome of <i>Fugu rubripes</i>
resolves10.1101/gr.10.4.547
Using <tt>GeneWise</tt> in the <i>Drosophila</i> Annotation Experiment
resolves10.1093/nar/24.14.2730
PairWise and SearchWise: Finding the Optimal Alignment in a Simultaneous Comparison of a Protein Profile against All DNA Translation Frames
resolves10.1006/jmbi.1997.0951
Prediction of complete gene structures in human genomic DNA
resolves10.1101/gr.1858004
The Ensembl Automatic Gene Annotation System
resolves10.1126/science.1080049
The Draft Genome of <i>Ciona intestinalis</i> : Insights into Chordate and Vertebrate Origins
resolves10.1093/bioinformatics/14.9.755
Profile hidden Markov models.
resolves10.1101/gr.830003
Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
resolves10.1038/nature01554
The genome sequence of the filamentous fungus Neurospora crassa
resolves10.1073/pnas.93.17.9061
Gene recognition via spliced sequence alignment.
resolves10.1101/gr.122800
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
resolves10.1038/nature01782
The DNA sequence of human chromosome 7
resolves10.1089/cmb.1998.5.493
Dynamic Programming Alignment Accuracy
resolves10.1101/gr.149502
GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
resolves10.1038/35057062
Initial sequencing and analysis of the human genome
resolves10.1101/gr.10.4.523
Using Database Matches with <tt>HMMGene </tt>for Automated Gene Detection in <i>Drosophila</i>
resolves10.1093/bioinformatics/18.10.1309
Comparative ab initio prediction of gene structures using pair HMMs
resolves10.1101/gr.871403
Comparative Gene Prediction in Human and Mouse
resolves10.1093/bioinformatics/19.2.219
Gene finding with a hidden Markov model of genome structure and evolution
resolves10.1145/640075.640111
Combining phylogenetic and hidden Markov models in biosequence analysis
resolves10.1038/nature01262
Initial sequencing and comparative analysis of the mouse genome
resolves10.1101/gr.175701
Computational Inference of Homologous Gene Structures in the Human Genome
resolves10.1038/nrg890
Computational prediction of eukaryotic protein-coding genes
The 4 references without a DOI — listed, not checked
no DOI — not checked2021111810540679000_14.5.988.3
no DOI — not checkedKulp, D., Haussler, D., Reese, M.G., and Eeckman, F.H. 1996. A generalized hidden Markov model for the recognition of human genes in DNA. In Proceedings of the fourth international conference on intelligent systems for molecular biology (eds. D.J. States et al.), pp. 134-142. AAAI Press, Menlo Park, CA.
no DOI — not checked2021111810540679000_14.5.988.21
no DOI — not checked2021111810540679000_14.5.988.25
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-08-07 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

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